PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16137.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 263aa    MW: 30041.2 Da    PI: 6.8652
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16137.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-091912252155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++++  LA+++gL+++q+ +WF N+R ++
  KZV16137.1 191 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 225
                 569*****************************885 PP
2ELK41.23.5e-14145166122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLg+LkqEF+
  KZV16137.1 145 ELKGQLLRKYSGYLGNLKQEFM 166
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-191054IPR005540KNOX1
PfamPF037905.0E-221250IPR005540KNOX1
SMARTSM012561.1E-2659110IPR005541KNOX2
PfamPF037912.1E-2163109IPR005541KNOX2
SMARTSM011884.5E-8145166IPR005539ELK domain
PfamPF037895.0E-11145166IPR005539ELK domain
PROSITE profilePS5121311.121145165IPR005539ELK domain
PROSITE profilePS5007112.989165228IPR001356Homeobox domain
SMARTSM003897.4E-13167232IPR001356Homeobox domain
SuperFamilySSF466891.07E-19167242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28170230IPR009057Homeodomain-like
CDDcd000862.57E-12177229No hitNo description
PfamPF059204.1E-17185224IPR008422Homeobox KN domain
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MESEGDGGSC SVKSKIMAHP HYPRLLAAYV NCQKIGAPPE VVAKLEEACA SATALGRNDR  60
GCVGEDPALD QFMEAYCEML TKYEQELSKP FKEAMLFLSR IECQFKALTL SHSDSGGKPS  120
ALNGSSEEEF DVNNSFIDPQ AEDRELKGQL LRKYSGYLGN LKQEFMKKRK KGKLPKEARQ  180
QLLDWWSRHY KWPYPSESQK LALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFVVMDAT  240
HPHYYMDNIM GNPFPMDISP SFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160169LKQEFMKKRK
2166170KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.11e-161homeobox protein SBH1
SwissprotP466081e-143HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A2Z7A3T20.0A0A2Z7A3T2_9LAMI; Uncharacterized protein
STRINGXP_010244154.11e-159(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-137KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]