PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16313.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family G2-like
Protein Properties Length: 337aa    MW: 38234.5 Da    PI: 9.0232
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16313.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.8e-3065118255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWtpeLH +F++a+e+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ++R+
  KZV16313.1  65 PRLRWTPELHICFLHAIERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMHRS 118
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2861119IPR009057Homeodomain-like
PROSITE profilePS5129412.66161121IPR017930Myb domain
SuperFamilySSF466897.53E-1562119IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-2265120IPR006447Myb domain, plants
PfamPF002493.1E-866117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEDSKRSPQI QAEGDDDDHE ECKRDESVSD NKPTNGNSSS NSTVEESGKK ANRGSVRQYV  60
RSKTPRLRWT PELHICFLHA IERLGGQERA TPKLVLQLMN VKGLSIAHVK SHLQMHRSKK  120
IDDPNQVLSE QRLLLDAGDR HIYNLSQLPM LQSCNQTPIS SLRYRDYHWG RNSIYSPRSM  180
ASSYNNITRN GPYGSSSWKF LEKYKTNLET SRNQRSPQIQ LETSSATHNF APSRQDGGRE  240
HDDVHAHSPL PILKRTPKAP QDEMINTLKR KFSPEVNLDL NLSLKTTRVN EENAETSLNN  300
DEVDSTLTLS LFSTSSKHQV NGDKKDAKMT STLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1766120357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1766120458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16313.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076824.26e-94uncharacterized protein LOC105160975
TrEMBLA0A2Z7A5C40.0A0A2Z7A5C4_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000772175e-72(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85732129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.13e-52G2-like family protein