PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16596.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 352aa    MW: 39373.9 Da    PI: 9.2687
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16596.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1192.4e-3752127276
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.EEETTT--SS--S-STTTT-------S- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.fhelsefDeekrsCrrrLakhnerrrkk 76 
                 Cqv+gC+ dl++ak+yhrrh++Ce hsk+p+++vsg+e+rfCqqCsr  h+lsefD++krsCrrrL++hn+rrr+ 
  KZV16596.1  52 CQVDGCNLDLTSAKDYHRRHRICERHSKSPSITVSGRERRFCQQCSRqLHDLSEFDDKKRSCRRRLSDHNARRRRL 127
                 **********************************************868*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-3148114IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.64149127IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-3450130IPR004333Transcription factor, SBP-box
PfamPF031103.1E-2952126IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHICLNVGKP KEYGDFFSPT STTKVLVPAI PVAGTVSKRS RAYYPNLQNP FCQVDGCNLD  60
LTSAKDYHRR HRICERHSKS PSITVSGRER RFCQQCSRQL HDLSEFDDKK RSCRRRLSDH  120
NARRRRLPPE SSTRLGSPTV LSAALHGDLS TLPNSIFPSS YSLNPHRISL KLADQRPHNV  180
LVNRPSVPVL NQTWENNSIS VADPSKVGGL EGGICFSGNK LHDSDPGMLR AIQIPRAQDL  240
DQCSHVSPVN RQATPDLLSV HSLLSYNPWI LNEAIHTPTA NYSDANSNYS PERHSDQHHW  300
AAVAAQFHSS NNISKGQSWI QAPDPGTPRL QESQLLRADY ESGFNHSNQR IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-26511261084squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108125KKRSCRRRLSDHNARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16596.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7A5670.0A0A2Z7A567_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136441216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-40squamosa promoter binding protein-like 2