PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16616.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 575aa    MW: 63263.5 Da    PI: 8.097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16616.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16398444455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  KZV16616.1 398 VHNLSERRRRDRINEKMRALQELIPHS-----NKSDKASMLDEAIEYMKSLQ 444
                 5*************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-20391457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.473394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-17397448No hitNo description
PfamPF000102.0E-13398444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-19398452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-17400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MLHQDPRCPE SSGGLRDEAL KSPDHGDLSS EITINLNVIF IARSAPAHRA PGKEPPRIIC  60
RVRRSPPSPN PSINIRWFFR SPIFGWAMDA TYNLPDWNTD VGGQVQVPNQ RRQLGLDNGL  120
VELLWQNGEV VLHSQSRRKV NHDPIKSKQG EESDQILTAT MNQDDETISW IHGPIDEAYD  180
KEFCSNFMSE NLVSTAVQAN KQSGSMECEK PFRFRASDVN HVYQTSQPPT FTPPPRFETL  240
EPALQDQSSG HVRKAGNLGF PGKPPVCNHM GCGEVHELSA RTVGSSHCGS NQLASSCGIG  300
GRTLSAGVNE NHTRNVSPRS GNREKETHDQ AISSSYGGSA SCFWKTINQS NDTNRHKRKS  360
RNATGSECPS DATEFESASG NKSFQRDGTN RRSRVAEVHN LSERRRRDRI NEKMRALQEL  420
IPHSNKSDKA SMLDEAIEYM KSLQSQIQLM WMGSGMSSMV IPGMQQFVPR IGMGIGPATV  480
PALANLMQLS RMPLVDQATA TNPTTNQATV GLRPPLGYQS QMQNPGFAEQ YANYMALCSM  540
QNTSQPMNMF GFGSHSSQQN HHASAPPGSG NGSAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402407ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100371.10.0transcription factor PIF4
RefseqXP_011100372.10.0transcription factor PIF4
TrEMBLA0A2Z7A5890.0A0A2Z7A589_9LAMI; Uncharacterized protein
STRINGXP_009602219.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.27e-47phytochrome interacting factor 4