PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV17104.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 251aa MW: 27418.1 Da PI: 7.3137

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV17104.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86	5.3e-27	2	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++Ca+dC+l+p + ++q++++ +++k++G++ +++l++a p + r+ ++ sl+yeA+ r+ dPv+G+vg+++++++ +q+++e+ KZV17104.1 2 SCNGCRVLRKGCAEDCILRPSLqwissSQSQANATLFLAKFYGRAGLINLIDAGPAHLRPVIFGSLLYEACGRIIDPVRGSVGLMSSGSWPQCQAAVEA 100 6*******************9998777889****************************************************************9 PP DUF260 95 allkee 100 +l +e+ KZV17104.1 101 VLKGEP 106 988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.209	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-21	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSCNGCRVLR KGCAEDCILR PSLQWISSSQ SQANATLFLA KFYGRAGLIN LIDAGPAHLR 60 PVIFGSLLYE ACGRIIDPVR GSVGLMSSGS WPQCQAAVEA VLKGEPIMTQ RSGDDDSSSA 120 SVKQSIMPLQ GCDIRHLSKD ASSAFPLRVK NRRRFKRSAK KNVDSAASEF ISESDAKFTI 180 TGWESGEDHK DFPCEVKREG SHDSSSVETV EQDLVNRVEP GPEYKPVLLD SGIKIQLELT 240 LGFNPVLDTQ R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV17104.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070804.1	1e-104	LOB domain-containing protein 40-like
TrEMBL	A0A2Z7A6A4	0.0	A0A2Z7A6A4_9LAMI; LOB domain-containing protein 42-like
STRING	Migut.E00341.1.p	3e-94	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-64	LOB domain-containing protein 41