PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17107.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family CO-like
Protein Properties Length: 385aa    MW: 43277.9 Da    PI: 7.8725
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17107.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.81.1e-081659340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+++ + ++ ++C  ++ +lC++C ++ H+       H++v
  KZV17107.1 16 ARACDNCIKRRAGWYCAADDAFLCKSCDSSVHSAndlarrHERV 59
                678*****************************657888888876 PP
2CCT67.83e-23326369144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  KZV17107.1 326 REARVSRYREKRRNRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 369
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7791461IPR000315B-box-type zinc finger
PfamPF006431.1E-61659IPR000315B-box-type zinc finger
CDDcd000212.47E-71761No hitNo description
PfamPF062037.1E-18326368IPR010402CCT domain
PROSITE profilePS5101716.073326368IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MNSDIKLANT FGAKSARACD NCIKRRAGWY CAADDAFLCK SCDSSVHSAN DLARRHERVR  60
LKISSIKSLD VKCRIYEPFW HKGFTKKART PRQKRHEKSI SPSHLVPEIC SEVNSSQENE  120
EQLQCRVPTF DRSASKPCNS VESVDINIHA EMYDLDGFLP SEMDLAEFAA DVESLLGKGL  180
DDNSLFSMEG LGLLDCDEEQ IYQVNGCGSL GRERVKLEAG RDDFEFNFGY DSAITGGEEE  240
KNFSVVGQPI LVNMKCDSKK KQNFLRLDYE GIISNWDGGK SPWTTGERPE LDSGDCWPDC  300
SGKCGEMHVC GETNMMSGAA MGDGGREARV SRYREKRRNR LFSKKIRYEV RKLNAEKRPR  360
MKGRFVKRAS FVTAAPSLPL LSARV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336352RRNRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076793.21e-154zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-92COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2Z7A6G10.0A0A2Z7A6G1_9LAMI; Zinc finger protein CONSTANS-LIKE 16
STRINGMigut.L01064.1.p1e-134(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-91B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]