PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17295.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 143aa    MW: 16101.2 Da    PI: 7.9383
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17295.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.46.8e-4051041100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaC++lrr+C++dC+++pyfp++++k+f++vhk++Gasnv k+l++lp ++r +a++sl+yeA +r++dPvyG+vg+i+ l qq+++++ +la++++
  KZV17295.1   5 RCAACRHLRRRCPSDCIFSPYFPSHDSKRFRCVHKIYGASNVAKMLQELPADRRAEAADSLYYEAYCRLKDPVYGCVGTITILCQQIHNAQCQLATTQA 103
                 6***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  KZV17295.1 104 E 104
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.8974105IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-385102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MNSSRCAACR HLRRRCPSDC IFSPYFPSHD SKRFRCVHKI YGASNVAKML QELPADRRAE  60
AADSLYYEAY CRLKDPVYGC VGTITILCQQ IHNAQCQLAT TQAEIASLSA HSGLQNQYPA  120
TPTFNLIDQY DVASANWSDF NLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3531059111LOB family transfactor Ramosa2.1
5ly0_B7e-3531059111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098999.12e-59LOB domain-containing protein 23-like
SwissprotP594681e-47LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2Z7AEB61e-103A0A2Z7AEB6_9LAMI; LOB domain-containing protein
STRINGEOY163045e-55(Theobroma cacao)
STRINGcassava4.1_026224m2e-55(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.14e-39LOB domain-containing protein 24