PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV17346.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 547aa MW: 61134.2 Da PI: 4.8419

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV17346.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	426.2	2.7e-130	178	547	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL++cA+a++ gdle+a+ +++ l++++s +gdp +Rlaay++eALaar+a s+++lykal+++e++ s e+l+a+++++e +P+++f++++aN KZV17346.1 178 KSLLFQCADAIHCGDLENASCIINLLRQRVSIQGDPSERLAAYMVEALAARMATSGKGLYKALKCKEAP---SLEQLSAMQILFEGCPCFRFGFMVANG 273 579***************************************************************9...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 a+lea++ e++vHi+Dfdi+qG Q+ +Ll +La+ p++ p++R+Tgv++pes+ l+ +g+rL+ +A+ l+++f+f++ va +++ +++++L+++ KZV17346.1 274 AMLEAFKDENMVHIVDFDINQGSQYYTLLTSLAKVPGKRPHVRLTGVDDPESVqrTVGGLKIIGQRLELLAKDLKLSFKFDA-VAAETALISPSMLDCQ 371 ***********************************************99778889*******************.7999******** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 pgEal+Vn+++qlh+++desvs+ + rd++L++vk+l+Pk+v++veq++++n+++Fl rf+ea +yysa+f+sl+a l+r+ ++r++vE+++l+r+i n KZV17346.1 372 PGEALIVNFAFQLHHMPDESVSTVNLRDQLLRMVKGLNPKLVTLVEQDVNTNTAPFLPRFAEAYSYYSAVFESLDAALGRDGQDRMNVEKQCLARDIIN 470 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vvacegaer+er e ++kWr+r+++aGF++ p+s ++ ++++ l+++++++ y+v+ee g+l +gWkd+ L++ SaWr KZV17346.1 471 VVACEGAERIERYEVAGKWRARMSMAGFTSCPISRNVKDEIRELIKRYSDR-YKVKEEIGALHFGWKDKMLIFSSAWR 547 *********************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.665	151	528	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-128	178	547	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MSLVRSAALF GSHELGSLKD VNENSGLSSS TFDSRNQGMI YPGESYSSDG FDPNYFLHSP 60 SEELACTNNP FISSLVAARH NAYEFNYDME YLNSPSPDAI DFDEDKMSLK LQEFEKALRN 120 DSEGHRDHSM EIDYEEIDAT CPYEMLNDSP KESSSSDSNL SRISCCKDLS VSTPQDTKSL 180 LFQCADAIHC GDLENASCII NLLRQRVSIQ GDPSERLAAY MVEALAARMA TSGKGLYKAL 240 KCKEAPSLEQ LSAMQILFEG CPCFRFGFMV ANGAMLEAFK DENMVHIVDF DINQGSQYYT 300 LLTSLAKVPG KRPHVRLTGV DDPESVQRTV GGLKIIGQRL ELLAKDLKLS FKFDAVAAET 360 ALISPSMLDC QPGEALIVNF AFQLHHMPDE SVSTVNLRDQ LLRMVKGLNP KLVTLVEQDV 420 NTNTAPFLPR FAEAYSYYSA VFESLDAALG RDGQDRMNVE KQCLARDIIN VVACEGAERI 480 ERYEVAGKWR ARMSMAGFTS CPISRNVKDE IRELIKRYSD RYKVKEEIGA LHFGWKDKML 540 IFSSAWR

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MSLVRSAALF GSHELGSLKD VNENSGLSSS TFDSRNQGMI YPGESYSSDG FDPNYFLHSP  60
SEELACTNNP FISSLVAARH NAYEFNYDME YLNSPSPDAI DFDEDKMSLK LQEFEKALRN  120
DSEGHRDHSM EIDYEEIDAT CPYEMLNDSP KESSSSDSNL SRISCCKDLS VSTPQDTKSL  180
LFQCADAIHC GDLENASCII NLLRQRVSIQ GDPSERLAAY MVEALAARMA TSGKGLYKAL  240
KCKEAPSLEQ LSAMQILFEG CPCFRFGFMV ANGAMLEAFK DENMVHIVDF DINQGSQYYT  300
LLTSLAKVPG KRPHVRLTGV DDPESVQRTV GGLKIIGQRL ELLAKDLKLS FKFDAVAAET  360
ALISPSMLDC QPGEALIVNF AFQLHHMPDE SVSTVNLRDQ LLRMVKGLNP KLVTLVEQDV  420
NTNTAPFLPR FAEAYSYYSA VFESLDAALG RDGQDRMNVE KQCLARDIIN VVACEGAERI  480
ERYEVAGKWR ARMSMAGFTS CPISRNVKDE IRELIKRYSD RYKVKEEIGA LHFGWKDKML  540
IFSSAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-61	183	546	25	378	Protein SCARECROW
5b3h_A	5e-61	183	546	24	377	Protein SCARECROW
5b3h_D	5e-61	183	546	24	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV17346.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101883.1	0.0	scarecrow-like protein 1
Refseq	XP_011101887.1	0.0	scarecrow-like protein 1
Refseq	XP_011101891.1	0.0	scarecrow-like protein 1
Refseq	XP_011101898.1	0.0	scarecrow-like protein 1
Refseq	XP_020547813.1	0.0	scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A2Z7A781	0.0	A0A2Z7A781_9LAMI; Scarecrow-like protein 1-like
STRING	XP_009628410.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8967	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]