PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17402.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 167aa    MW: 19135.7 Da    PI: 8.8694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17402.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-131560348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W++ Ed +l d+++ +G g+W+++++  g+ R++k c++rw + l
       KZV17402.1 15 SWSEKEDTKLTDYINVHGEGRWSKVPKSTGLQRCGKCCRLRWMNTL 60
                     7******************************************975 PP
2Myb_DNA-binding44.14.9e-1470111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + ++E++l++++ ++lG++ W++Ia +++ gRt+ +++++w+++
       KZV17402.1  70 FGEDEEDLIIRLYALLGNR-WSLIAGRLP-GRTDDEVRNHWHSH 111
                      679****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.686860IPR017877Myb-like domain
SMARTSM007174.8E-81262IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-181567IPR009057Homeodomain-like
SuperFamilySSF466898.2E-2515108IPR009057Homeodomain-like
PfamPF002493.0E-111559IPR001005SANT/Myb domain
CDDcd001673.68E-81560No hitNo description
PROSITE profilePS5129418.22461116IPR017930Myb domain
SMARTSM007171.2E-1166114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1968117IPR009057Homeodomain-like
PfamPF002497.7E-1370111IPR001005SANT/Myb domain
CDDcd001676.67E-972111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MRKCCDSKRY TEESSWSEKE DTKLTDYINV HGEGRWSKVP KSTGLQRCGK CCRLRWMNTL  60
RPKSKQGNYF GEDEEDLIIR LYALLGNRWS LIAGRLPGRT DDEVRNHWHS HTKKKLIKMG  120
ADPSKHGLKL CPYTTFSCTK ILGPDGNMQD ESSGSINDPQ VSGRPEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-201611610108B-MYB
1h8a_C6e-201611630128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17402.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891126.11e-59transcription repressor MYB6-like
SwissprotQ388519e-48MYB6_ARATH; Transcription repressor MYB6
SwissprotQ9S9K91e-47MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2Z7AEQ71e-121A0A2Z7AEQ7_9LAMI; Myb-related protein 308-like
STRINGXP_008240175.15e-56(Prunus mume)
STRINGGorai.007G179300.17e-56(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.14e-50myb domain protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]