PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17703.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HB-other
Protein Properties Length: 156aa    MW: 18376.6 Da    PI: 5.9506
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17703.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-202275356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                kR+++t++q++eLe++F+  ++p+ ++r+ L+ +lgL+ +qVk+WFqN+R++ k
  KZV17703.1 22 KRRRHTQHQIQELESFFKDWPNPDYRQRRALSLELGLEPQQVKYWFQNKRTQLK 75
                899***********************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611777IPR001356Homeobox domain
SMARTSM003896.9E-142081IPR001356Homeobox domain
SuperFamilySSF466891.5E-182080IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-172180IPR009057Homeodomain-like
PfamPF000461.9E-172275IPR001356Homeobox domain
CDDcd000862.92E-152278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MADKDIYQFD LNLNGEEDVQ PKRRRHTQHQ IQELESFFKD WPNPDYRQRR ALSLELGLEP  60
QQVKYWFQNK RTQLKGQHGH LENMELHAEN ERLKAENTSL MEQIKNVACL SCAGPMIREM  120
SDTERLRAEN VHLREEIDRV SATAAQYIGK PLTDSD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346056.17e-49homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ0J9X23e-46ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A2K3L2P43e-47A0A2K3L2P4_TRIPR; Homeobox-leucine zipper protein HDG2-like (Fragment)
TrEMBLA0A2K3P3R24e-47A0A2K3P3R2_TRIPR; Homeobox-leucine zipper protein HDG2-like
STRINGPavir.J18262.1.p8e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13806913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-47protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]