PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17764.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 241aa    MW: 27648.7 Da    PI: 7.4473
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17764.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.1e-1643130196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 f+k ++ps+v    +l lpkkf++ +  +  ++ t+ l de+g++++  +  ++++    l++GW++F  +++L  gD+++F+l++  +   +v++
  KZV17764.1  43 FVKCMLPSNVAHGFWLHLPKKFCTLYFPN--RDSTICLVDEWGNEYKTSYLLERHG----LSAGWRGFSISHRLLNGDILIFHLIEPCKL--KVHI 130
                 89*********************999744..5669***************777776....***********************9986555..5544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-2237132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-1939132IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-2341130No hitNo description
PfamPF023621.9E-1343130IPR003340B3 DNA binding domain
SMARTSM010195.5E-1943134IPR003340B3 DNA binding domain
PROSITE profilePS5086311.4243134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSNSIARKRT RYSDIYDDVE AKFSVMERAE RVLTRLENGL PYFVKCMLPS NVAHGFWLHL  60
PKKFCTLYFP NRDSTICLVD EWGNEYKTSY LLERHGLSAG WRGFSISHRL LNGDILIFHL  120
IEPCKLKVHI VTVNRSEVMS AALCLMNLDA SRRGIDDSEN LVKKNSKKRK KTEYVEPFLL  180
DMSGPNESCE VKNEPCSDFG SNSQDFSSTI IQGSNQLKAN DLCYPETLML HDHPRETITC  240
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17764.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088276.11e-119B3 domain-containing protein At3g19184 isoform X1
TrEMBLA0A2G9HCQ11e-101A0A2G9HCQ1_9LAMI; Uncharacterized protein
TrEMBLA0A2Z7BYW91e-102A0A2Z7BYW9_9LAMI; Uncharacterized protein
STRINGXP_009612758.12e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-33B3 family protein