PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18255.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 179aa    MW: 20008.2 Da    PI: 4.7107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18255.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-182272155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr +k +g++v+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  KZV18255.1 22 CKYKGVRKRK-WGKFVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 72
                79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-302282No hitNo description
PfamPF008476.6E-112272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-292381IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-202381IPR016177DNA-binding domain
PROSITE profilePS5103221.7862380IPR001471AP2/ERF domain
SMARTSM003801.7E-332386IPR001471AP2/ERF domain
PRINTSPR003671.8E-92435IPR001471AP2/ERF domain
PRINTSPR003671.8E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVRSTSSTVG RESEASAASS SCKYKGVRKR KWGKFVSEIR LPNSRERIWL GSYDTAEKAA  60
RAFDAALFCL RGRNAKFNFP ENPPEISNGM SMSPESPCPS VSYGTAQADN VFANMPLDTP  120
FLDQFLAMGH ENNAHDIGVF TGYEDFSGEF YIPPLPSSDL WPDYTEEEIS SQNSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-161681773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093871.18e-75ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-48ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2Z7AA581e-130A0A2Z7AA58_9LAMI; Dehydration-responsive element binding protein 3
STRINGMigut.L01585.1.p3e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]