PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18648.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 275aa    MW: 30636 Da    PI: 8.2881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18648.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13106152354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR++iN+ +++Lr+llP+       K +Ka+ L  +v+++k+L
  KZV18648.1 106 KSHSEAERRRRAKINNHLAKLRSLLPST-----IKTDKASLLAGVVQHVKEL 152
                 79*************************8.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.669103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-12106155No hitNo description
PfamPF000104.4E-11106152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-14106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-13107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-4189248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDAYNIGVGG STLAFSKPSQ AMPPVHVFNP VDNDPFHLRP PPPFGGFCNL RSSSYNEQVL  60
DRPVRLISES VVQMVHPNSD PFGLQAELLK MTTQEMMDAK ALAASKSHSE AERRRRAKIN  120
NHLAKLRSLL PSTIKTDKAS LLAGVVQHVK ELKRQTFLIQ RTSPVPSETD EITVDNASNK  180
DAKLVFKASF CCEDRSDLLP DLIKTLKSLR LRTLKAEIAT LGGRVKSVLY ITCEEDHQDS  240
KNDRSGFEKQ QQLCISSIEQ ALQEVIKCNG NEYCN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077316.11e-100transcription factor bHLH30
SwissprotQ9S7Y12e-73BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2Z7AAB30.0A0A2Z7AAB3_9LAMI; Uncharacterized protein
STRINGXP_004297146.13e-97(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]