PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18759.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 239aa    MW: 27075.3 Da    PI: 5.7725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18759.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-09129170854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + r+RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  KZV18759.1 129 AARQRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 170
                 569******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14126182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-13127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-12127175No hitNo description
PfamPF000101.2E-6130170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDISHHKLTN SYNWEPYDMA MEDQALHLQD HQTLFDNNHT QWPNYPAILQ ETSNNSPPRP  60
FLAAPSFDEA ENFKLEVDQE CEEPDEELGT MKEMMFKIAA MQPVDIDPAT IRKPKRRNVR  120
ISDDPQSVAA RQRRERISEK IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLQGG  180
GSHHQPPCVG ATTNTATTAD VDWAALGGTS SYLFGGNSSD HMGGEEHHPI CYNPKFIGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RQRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18759.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554927.12e-81transcription factor HEC3
SwissprotQ9LXD87e-45HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A2Z7AI310.0A0A2Z7AI31_9LAMI; Uncharacterized protein
STRINGVIT_04s0044g01040.t011e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]