PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18878.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family YABBY
Protein Properties Length: 147aa    MW: 16540.9 Da    PI: 10.0841
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18878.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY157.79.4e-49713923170
       YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPek 121
                  vsvP +slf vvtvrCGhCt+l +vn+a a q l  + +       +++  ++ + +  +s + +++   + ++s         + p+++ ++rPPek
  KZV18878.1   7 QVSVPCSSLFDVVTVRCGHCTNLWTVNMAAAFQCLQQNAQ------GPIHSSTELKADLGSSSKLNNR--LAIQPS-------ITKKPEPKIANRPPEK 90 
                 69***********************999998888776665......3344333333222222222222..122222.......12234444579***** PP

       YABBY 122 rqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 rqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahf +ihfgl
  KZV18878.1  91 RQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFTHIHFGL 139
                 ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-567139IPR006780YABBY protein
SuperFamilySSF470951.57E-874132IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-493131IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MFELNVQVSV PCSSLFDVVT VRCGHCTNLW TVNMAAAFQC LQQNAQGPIH SSTELKADLG  60
SSSKLNNRLA IQPSITKKPE PKIANRPPEK RQRVPSAYNQ FIKEEIQRIK ANNPEISHRE  120
AFSTAAKNWA HFTHIHFGLM LDSNKSR
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078402.14e-78axial regulator YABBY 5
SwissprotQ8GW467e-63YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A2Z7AAY41e-106A0A2Z7AAY4_9LAMI; Uncharacterized protein
STRINGXP_007155017.13e-73(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-65YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]