PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV19009.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 206aa    MW: 24046.2 Da    PI: 6.1534
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV19009.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.3e-2157109456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +t++++eq+++Le++F +++++  e++ +LA++lgL+ rqV vWFqNrRak+k
  KZV19009.1  57 KTKLNEEQVNILEKHFGSEHKLESERKDRLAAELGLQPRQVAVWFQNRRAKWK 109
                 7999************************************************9 PP
2HD-ZIP_I/II111.17.4e-3656147293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k +l++eqv++LE++F +e+kLe+erK +la eLglqprqvavWFqnrRA++k+++lE++y++Lk+++d+ + e++ Le++  +L+e+lk+
   KZV19009.1  56 RKTKLNEEQVNILEKHFGSEHKLESERKDRLAAELGLQPRQVAVWFQNRRAKWKSQRLEEEYSKLKSQHDTAVVEKCCLETQLLKLQEQLKD 147
                  799**************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.5E-1953115IPR001356Homeobox domain
PROSITE profilePS5007117.0756111IPR001356Homeobox domain
CDDcd000865.03E-1656112No hitNo description
PfamPF000461.9E-1857109IPR001356Homeobox domain
SuperFamilySSF466891.2E-1857120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-2157118IPR009057Homeodomain-like
PRINTSPR000314.5E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000314.5E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDPLEYDPQM LLDISQFYTS ETCNQILPEK EKQKARGRRK KISKNIDGEN VGVMLRKTKL  60
NEEQVNILEK HFGSEHKLES ERKDRLAAEL GLQPRQVAVW FQNRRAKWKS QRLEEEYSKL  120
KSQHDTAVVE KCCLETQLLK LQEQLKDAEK EIQRLSSNSP TSSFSMEAMD PSNYLGEFGA  180
QGLESVFHLP TNDFVPSLQW DNFYYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12940KEKQKARGRRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV19009.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.21e-69homeobox-leucine zipper protein ATHB-40
SwissprotO232082e-52ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2Z7AIT41e-151A0A2Z7AIT4_9LAMI; Homeobox-leucine zipper protein ATHB-40
STRINGSolyc02g085630.2.14e-64(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.17e-45homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]