PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV19051.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YB
Protein Properties Length: 225aa    MW: 25630.6 Da    PI: 6.0433
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV19051.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.65.6e-5666161297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+eas+kcqrekrktingdd+lwa+ tlGfedyv+plk+yl+kyre+egek
  KZV19051.1  66 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDILWAIMTLGFEDYVNPLKLYLTKYREIEGEK 161
                 89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5159172IPR009072Histone-fold
SuperFamilySSF471131.37E-3968169IPR009072Histone-fold
PfamPF008081.6E-2871135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-1999117No hitNo description
PROSITE patternPS006850102118IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-19118136No hitNo description
PRINTSPR006151.6E-19137155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKRARDNEYE SPPNRPFRIN QETTSSNTQN ITTFPTNINI SNVENANKSP KDTSIGNNND  60
NNNINKEQDR FLPIANVGRI MKKVIPGNGK ISKDAKETVQ ECVSEFISFV TGEASEKCQR  120
EKRKTINGDD ILWAIMTLGF EDYVNPLKLY LTKYREIEGE KLNVPKQQRL EQHDQKPNVA  180
YNNVYGSTNM MPQPFVSNDP SFPLSFSQNS IPTTLPQQDN IDGPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-4566156797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV19051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078767.11e-107nuclear transcription factor Y subunit B-7
SwissprotQ9SIT91e-63NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A2Z7ABS01e-164A0A2Z7ABS0_9LAMI; Nuclear transcription factor Y subunit B-7-like
STRINGPGSC0003DMT4000431769e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.17e-66nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]