PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV19244.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 271aa    MW: 30365.8 Da    PI: 7.8769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV19244.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-1479130155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  KZV19244.1  79 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 130
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.60E-1277134No hitNo description
SuperFamilySSF474594.58E-1777149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19978129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1179130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1479149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1084135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MALEALSSNE FLNFIMYDSI IGACNDDTSA VLAPQEIGGQ RSCSYQPEAP AERPAAAPGR  60
KKRRRRPRVC KNKEEAETQR MTHIAVERNR RKQMNEHLAV LRSLMPESYV QRGDQASIVG  120
GAIEFVKELE HTLQSLEAKK HKLIQQSTEM KADPQSPFAQ FFAYPQFQLS GKYTSQSKAA  180
IADIEVTLIE THANIRILSQ KRLRQLSKIV AAFHSLCFTI LHLNVTTLDS LVLYSISAKV  240
EEGCQLNSAD DIASAVHHML RIIEEEAILC S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965RKKRRRR
26065KKRRRR
37990RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV19244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022881645.11e-122transcription factor bHLH71-like isoform X1
RefseqXP_022881646.11e-122transcription factor bHLH71-like isoform X2
SwissprotQ9C7T44e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2Z7AJ590.0A0A2Z7AJ59_9LAMI; Uncharacterized protein
STRINGcassava4.1_012613m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.16e-72beta HLH protein 71
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]