PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV19665.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 321aa    MW: 35170.7 Da    PI: 4.6273
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV19665.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29145203259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ve+s +d +++++ Y+geH+h+
  KZV19665.1 145 ADLWAWRKYGQKPIKGSPYPRNYYRCSTSkGCAARKQVEQSPTDSNIFIVSYTGEHTHP 203
                 699***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-30131205IPR003657WRKY domain
PROSITE profilePS5081131.766139205IPR003657WRKY domain
SuperFamilySSF1182901.09E-25143205IPR003657WRKY domain
SMARTSM007745.1E-36144204IPR003657WRKY domain
PfamPF031063.8E-25146203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDDDWGLHAV VRGCATFNTT ASAVADIPFP SSSSLPLHND KNSYEFADIG DDRDDPFQGL  60
REIYKKFCVD EQFSPTAANP PQETLQMPAP RMNMQTQGNS QFNVNPASAS SLSVPAANCQ  120
PIRNRRRKNQ QAKRVREITL EELSADLWAW RKYGQKPIKG SPYPRNYYRC STSKGCAARK  180
QVEQSPTDSN IFIVSYTGEH THPRPTHRSS LAGSIRNKIS PAATNKNMLP LLPNSLLSFS  240
SPGSVSGFSP NTPLPAGGAV EQNNAAVVVQ ADEDSEGDEE DIADILFDPI NEEEDIFTVF  300
QDSDDHDSSG ADGSDLMFSP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-211452061780Disease resistance protein RRS1
5w3x_D4e-211452061780Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV19665.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548861.13e-96probable WRKY transcription factor 27 isoform X1
SwissprotQ9FLX87e-52WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A2Z7AD360.0A0A2Z7AD36_9LAMI; Uncharacterized protein
STRINGMigut.F00276.1.p1e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138601014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-46WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]