PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV19784.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

BES1

Protein Properties

Length: 684aa MW: 76974.5 Da PI: 7.3305

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV19784.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	140.6	1.4e-43	63	190	2	130
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslks 100 ++ rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGwvve+DGtty+++s + + s+ s++ s ++ + KZV19784.1 63 AKSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWVVEADGTTYKQSSPAPPPPTPHSFSHLDSVQQSDHN-NAA 160 678******************************************************************98877755555555555555555453.344 PP DUF822 101 salaspvesysaspksssfpspssldsisl 130 s pv s ++ ++sss + s ++si+ KZV19784.1 161 SVGVYPVRSVESPLSSSSLKNCSMMSSIEC 190 444566777776666666666666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-43	64	212	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	3.8E-166	254	682	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	1.73E-151	254	681	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	1.2E-81	275	651	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	290	304	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	311	329	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	333	354	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	424	446	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	497	516	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	531	547	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	548	559	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	566	589	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.7E-51	604	626	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MYSNTSPVNN RFVAADQDLQ LPQPQQKSPT ATTTYSHHPQ PQRRPRGFAA TFSTDSATST 60 IQAKSRKERE KEKERTKLRE RHRRAITSRM LAGLRQYGNF PLPARADMND VIAALAREAG 120 WVVEADGTTY KQSSPAPPPP TPHSFSHLDS VQQSDHNNAA SVGVYPVRSV ESPLSSSSLK 180 NCSMMSSIEC PPSGLRIDES LSPASLDSAV AERGVSLGNC AFASAVPSSE SLEPRKLVQE 240 VVYKEHGSGL SGTSFIPVYV KLSTGLVNNF CQLMDPEGIK QEIHHLKSLC VDGVVVDCWW 300 GIVEGWTPQK YEWAGYRELF NIIQEFGMKL KVVMAFHEHG GYGSGFISLP QWILEVGKIN 360 QDIFFTDREG RRNTECLSWG IDKKRVLRGR TGIEVYYDFM RSFRTEFDDF FIKGLITAVE 420 IGLGPSGELK YPSFSERMGW RYPGIGEFQC YDKYFLQDLG KAAKLRGHTV WARGPENAGY 480 YNSKPQETGF FSENGDYDSY YGRFFLQWYS QFLLDHADNV LTLARLAFEE IQIVVKIPAV 540 FWWYKTTSHA AELTAGYYNR ANQNGYSRVF DVLKKHAVTL NFLVSGPLAS SSEIDEASSD 600 HEGLSWQILS SAWDQGLSVA GQNAQPCLDK EGFTRLVETA KPRSHPDGRH FSFFTFQQHS 660 PLFQRTTCFA QIESFIKRMH GEHS

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MYSNTSPVNN RFVAADQDLQ LPQPQQKSPT ATTTYSHHPQ PQRRPRGFAA TFSTDSATST  60
IQAKSRKERE KEKERTKLRE RHRRAITSRM LAGLRQYGNF PLPARADMND VIAALAREAG  120
WVVEADGTTY KQSSPAPPPP TPHSFSHLDS VQQSDHNNAA SVGVYPVRSV ESPLSSSSLK  180
NCSMMSSIEC PPSGLRIDES LSPASLDSAV AERGVSLGNC AFASAVPSSE SLEPRKLVQE  240
VVYKEHGSGL SGTSFIPVYV KLSTGLVNNF CQLMDPEGIK QEIHHLKSLC VDGVVVDCWW  300
GIVEGWTPQK YEWAGYRELF NIIQEFGMKL KVVMAFHEHG GYGSGFISLP QWILEVGKIN  360
QDIFFTDREG RRNTECLSWG IDKKRVLRGR TGIEVYYDFM RSFRTEFDDF FIKGLITAVE  420
IGLGPSGELK YPSFSERMGW RYPGIGEFQC YDKYFLQDLG KAAKLRGHTV WARGPENAGY  480
YNSKPQETGF FSENGDYDSY YGRFFLQWYS QFLLDHADNV LTLARLAFEE IQIVVKIPAV  540
FWWYKTTSHA AELTAGYYNR ANQNGYSRVF DVLKKHAVTL NFLVSGPLAS SSEIDEASSD  600
HEGLSWQILS SAWDQGLSVA GQNAQPCLDK EGFTRLVETA KPRSHPDGRH FSFFTFQQHS  660
PLFQRTTCFA QIESFIKRMH GEHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1v3i_A	1e-123	254	684	10	446	Beta-amylase
1wdq_A	1e-123	254	684	10	446	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV19784.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082155.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2Z7AKX7	0.0	A0A2Z7AKX7_9LAMI; Beta-amylase
STRING	Migut.A00486.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]