PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20155.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 29275.6 Da    PI: 9.6369
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20155.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvt+skRrngi+ KA+EL vLCda+v++i++sst kl+ey+s
  KZV20155.1  9 KRIENQTNRQVTYSKRRNGIFRKAQELTVLCDAKVSIIMISSTRKLHEYIS 59
                79***********************************************86 PP
2K-box75.91.1e-2571168198
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 yq++ g++l+++++e++qq+l+kLk+ ++nL+ e+R+++Ge+  +L + +  +L +++++sl  iR++K++++ +qi++ +kk  ++++++++L  ++
  KZV20155.1  71 YQTAAGVDLWSSQYEKMQQQLNKLKDVNRNLKCEIRRRIGESAADLGYDDTVNLIEDIHNSLHVIRERKYKVISNQIQTGKKKLTNVEDIHRNLLLEF 168
                 7889999**************************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.642161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-34295IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-26323IPR002100Transcription factor, MADS-box
CDDcd002652.26E-36380No hitNo description
PfamPF003193.1E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-1482167IPR002487Transcription factor, K-box
PROSITE profilePS5129712.60284174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MTRGKIQIKR IENQTNRQVT YSKRRNGIFR KAQELTVLCD AKVSIIMISS TRKLHEYISP  60
SFTTKQFFDQ YQTAAGVDLW SSQYEKMQQQ LNKLKDVNRN LKCEIRRRIG ESAADLGYDD  120
TVNLIEDIHN SLHVIRERKY KVISNQIQTG KKKLTNVEDI HRNLLLEFDD PHYGLVENEG  180
GYNSVLGFTN DGQMWRYASR PLPNLIFTEA AADLVSPCLI CSIEFFIMLE NVLVSRVFVW  240
FWIRRLRPIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-13159159MEF2C
5f28_B1e-13159159MEF2C
5f28_C1e-13159159MEF2C
5f28_D1e-13159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306615.11e-105floral homeotic protein DEFICIENS
SwissprotP237061e-105DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A2Z7AEI40.0A0A2Z7AEI4_9LAMI; Floral homeotic protein PMADS 1-like
STRINGMigut.N03130.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]