PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20160.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 170aa    MW: 18887.6 Da    PI: 4.427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20160.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-191362255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr++  +g+Wv+eIr+p     + +r++lg+f+t ++Aa a++aa++kl+g
  KZV20160.1 13 TYKGVRQRT-WGKWVSEIREPD----SgQRVWLGTFDTSFDAAMAYDAAARKLYG 62
                69****999.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.43E-191271No hitNo description
Gene3DG3DSA:3.30.730.107.6E-301371IPR001471AP2/ERF domain
PfamPF008479.3E-131362IPR001471AP2/ERF domain
PROSITE profilePS5103221.2591370IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-201371IPR016177DNA-binding domain
SMARTSM003805.8E-341376IPR001471AP2/ERF domain
PRINTSPR003671.5E-91425IPR001471AP2/ERF domain
PRINTSPR003671.5E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MRGKGGPDNA SCTYKGVRQR TWGKWVSEIR EPDSGQRVWL GTFDTSFDAA MAYDAAARKL  60
YGPDAKVNLP HMHGEKIEYQ KNVAQTSNEP SNLDHYYKSD DHGMNCFQGV GSASENLNVN  120
LPEVDDSSLW AEAVKDTCFS IVDDPGDFAC DFDYGNHDTD GVPFTWTFIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-161470663ATERF1
3gcc_A2e-161470663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083628.18e-66dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ22e-43DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2Z7AFS31e-125A0A2Z7AFS3_9LAMI; Dehydration-responsive element-binding protein 2D-like
STRINGXP_009767453.12e-44(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.18e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]