PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20751.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YA
Protein Properties Length: 246aa    MW: 27273.3 Da    PI: 9.4651
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20751.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-3295151158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  KZV20751.1  95 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKTRKPYLHESRHVHALNRVRGSGGRF 151
                 57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-3693154IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.57694154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-2497119IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-2797151IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686099119IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.3E-24128151IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEKTSSQDHS ASSDSAHDEN YEKQGNYMKP ALFHCDPNFS TNASQVDINQ PMVPYCYSDP  60
CLGGFFTAYS PHTMIQPHGG AASGRVPLPV NLPEDGPIYV NAKQYHGILR RRQIRAKLEA  120
QNKLVKTRKP YLHESRHVHA LNRVRGSGGR FLSTKKPQQS GTNSTPSSRN TQDSLHFNQN  180
GEFLEGDSRL FDDNKRKLPP VADRMSISQA ESPFSSIPSH VQVSMQGGGG SGLVYNGNWH  240
YASTVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2195155262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20751.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553567.12e-98nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020553568.12e-98nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020553569.12e-98nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020553572.11e-98nuclear transcription factor Y subunit A-3 isoform X5
RefseqXP_020553573.11e-98nuclear transcription factor Y subunit A-3 isoform X5
TrEMBLA0A2G9HRD36e-85A0A2G9HRD3_9LAMI; CCAAT-binding factor, subunit B (HAP2)
STRINGMigut.J00955.1.p3e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.17e-39nuclear factor Y, subunit A6