PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20936.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family CO-like
Protein Properties Length: 399aa    MW: 43485.4 Da    PI: 5.6651
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20936.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.4e-07544639
    zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                C+ ++e++ + fC+++   lC +C  + H+       H++
  KZV20936.1  5 CDFCGEQRSIVFCRSDAASLCLSCDRNVHSAnalskrHSR 44
                *****************************65667777765 PP
2zf-B_box20.78.5e-074690442
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 +C++++++++   C + +  lC++C   +H g      H+++p+
  KZV20936.1 46 LVCERCNSQPAFVRCIEERLSLCQNCDWMGHTGsntgpaHQRQPV 90
                68*****************************88899999998875 PP
3CCT621.9e-21342385144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R  a++RYkeK+k RkFeKk+rYesRKa+A+ R RvKGrFvk+ 
  KZV20936.1 342 RSDAVMRYKEKKKARKFEKKVRYESRKARADVRRRVKGRFVKAG 385
                 889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.357147IPR000315B-box-type zinc finger
CDDcd000211.84E-6447No hitNo description
SMARTSM003361.6E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1724390IPR000315B-box-type zinc finger
CDDcd000214.00E-54790No hitNo description
SMARTSM003364.44890IPR000315B-box-type zinc finger
PfamPF062033.2E-16342384IPR010402CCT domain
PROSITE profilePS5101715.269342384IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGYHCDFCGE QRSIVFCRSD AASLCLSCDR NVHSANALSK RHSRTLVCER CNSQPAFVRC  60
IEERLSLCQN CDWMGHTGSN TGPAHQRQPV NCYSGCPSAA ELSEVWSFLL DFPSVGDSTC  120
EQGMGSMSIT DNRPRDCQGS QRKNNVQNAS NVMDKSTVWM QSASPLLDQN PHDLDQLAGA  180
SCSTTPKVFL SEAKAPAPAL CVDDGFYNDF DMDEVDIGIE NYEEFFGVAH NDPEQLFDDG  240
LFGTKGISGS NCLGAYAAEG SLGGRVNMPA CSNVASADSV MSCKTEPNMR FAQQAHSGIS  300
FSGLTGESSA CDFQDCGASS IPIIGEPPWG PPGPENSVSC SRSDAVMRYK EKKKARKFEK  360
KVRYESRKAR ADVRRRVKGR FVKAGDAYDY DPLSPSRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100551.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100552.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_011100553.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-136COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
SwissprotQ9SSE51e-136COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2Z7AH950.0A0A2Z7AH95_9LAMI; B-box type zinc finger protein with CCT domain isoform 1
STRINGMigut.M00064.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-112B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]