PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21236.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 114aa    MW: 13799.2 Da    PI: 10.13
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21236.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.4e-13745240
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                +i ++++r+  f +R +g+lKK +ELS+LC+++va++i 
  KZV21236.1  7 KILDERQRNKVFKNRSEGLLKKLSELSILCGIDVAMVIH 45
                67788999999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-4157IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-16591IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.446644IPR002100Transcription factor, MADS-box
CDDcd002661.10E-15681No hitNo description
PfamPF003191.4E-13746IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MPKIHKKILD ERQRNKVFKN RSEGLLKKLS ELSILCGIDV AMVIHKRDED NATLWPSPEM  60
YRDKMQKFLN FSSIAREKKM VTHENYLDQR VLDESSILFK EQMRYWKLNW LLMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21236.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AI714e-78A0A2Z7AI71_9LAMI; AGAMOUS-like 48
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-09M-type_MADS family protein