PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21484.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 184aa    MW: 21578.2 Da    PI: 5.5171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21484.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000223153123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C +C++ F +   L  H++ H
  KZV21484.1 31 YECVYCKRGFDSAQALGGHMNIH 53
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-62958No hitNo description
PfamPF139122.3E-63155IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.993158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MESNYHQEES TNSSEEVEQD NDFDLGMGRS YECVYCKRGF DSAQALGGHM NIHRKDKSRN  60
KATPRKPEDN NYTGPRLYQQ TPDSRKDHFS HHDHHIIDAT HFQEYAGSSG ATRPLYGGHD  120
NEQQQQIYRR THDFDRYTNQ FSRGDWRAGL EYSPLIVEDV EMNRRVENNS KEELDLELRL  180
GYDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080295.13e-42transcriptional regulator SUPERMAN-like
TrEMBLA0A2Z7AIW71e-136A0A2Z7AIW7_9LAMI; Nucleic acid binding protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-13C2H2 family protein