PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21579.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 267aa    MW: 30086.3 Da    PI: 4.5693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21579.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151462146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46
                     rgrWT+eEde+l +++++ G g+W++ ++       gRt++++k++w++
       KZV21579.1 14 RGRWTAEEDEILRNYIQRNGEGCWRSLPKNAAgqlPGRTDNEIKNYWNS 62
                     8****************************9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-21570IPR009057Homeodomain-like
SuperFamilySSF466892.37E-14970IPR009057Homeodomain-like
PROSITE profilePS5129420.54968IPR017930Myb domain
SMARTSM007172.5E-121366IPR001005SANT/Myb domain
PfamPF002498.9E-131462IPR001005SANT/Myb domain
CDDcd001671.68E-101664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRTPCCEKV GLRRGRWTAE EDEILRNYIQ RNGEGCWRSL PKNAAGQLPG RTDNEIKNYW  60
NSRLSRKINN NYPQPNPPVA PPPPAKHPRK RVSIKNTHKS IDQKDNIVTD DNDTTMVSDY  120
QDSTSTIKEE AMEDWPSINI HETDQYRGIS TDINKKSTGV MDSGQIPCEL RDNIVKPEES  180
LTMIVGTSGI ADEAKANEGF ETKETQKMEP CDVDNAGGTN STDVDWEGSI LWGEDEEDIL  240
SHWLSGIDNV NGVEKHEQMM AWLLSLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AQE90.0A0A2Z7AQE9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-28myb domain protein 12