PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV21691.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 262aa MW: 29779.8 Da PI: 7.8525

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV21691.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.9	6.7e-33	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCa+C+++rr+C+++C lapyfpa+qpk f+n+hklFG++n+ k+l++l+ +++ +a++++ y A+++ + Pv+G + i++l q++ +++el+++ + KZV21691.1 10 ACAVCRYQRRRCTTECLLAPYFPADQPKMFQNAHKLFGVNNIKKILEHLSLDQKIIAAKTVKYVANMWNKYPVHGPLVEIRRLIYQIQVVAEELQAALA 108 7********************************************************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.253	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-30	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MALKIRNGQA CAVCRYQRRR CTTECLLAPY FPADQPKMFQ NAHKLFGVNN IKKILEHLSL 60 DQKIIAAKTV KYVANMWNKY PVHGPLVEIR RLIYQIQVVA EELQAALAQL ASYRQQHQLQ 120 DMSHDTHNTD SLHAAVTLFP VTLNVSYSNN FNSFSDNYSD AKVNDAANAL WLQQMNSNNY 180 NASLIAMQSE LTSQPMSIQQ DTTQDIDEIH KLFYGSDYRK SYIGSMRLCG MESSTGYSRQ 240 VIEQMDEKEL KNAAGCFTFA GV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-20	8	113	9	114	LOB family transfactor Ramosa2.1
5ly0_B	8e-20	8	113	9	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV21691.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022852660.1	4e-78	LOB domain-containing protein 27-like
TrEMBL	A0A2Z7AIT1	0.0	A0A2Z7AIT1_9LAMI; Uncharacterized protein
STRING	XP_009588931.1	4e-66	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-28	LOB domain-containing protein 27