PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21767.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 1488aa    MW: 165351 Da    PI: 6.1112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21767.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11343385754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  KZV21767.1 343 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 385
                 79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-16339403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8342385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-14342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15343398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-12343389No hitNo description
CDDcd048736.01E-7461521No hitNo description
Gene3DG3DSA:1.25.40.102.6E-12646725IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.182649683IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.511703737IPR002885Pentatricopeptide repeat
PfamPF015350.25707727IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.719738772IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.759773807IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-7775809IPR002885Pentatricopeptide repeat
PfamPF015354.9E-7775805IPR002885Pentatricopeptide repeat
PfamPF130413.3E-17807856IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.816808842IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.233843877IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.0E-9845878IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.161878912IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-4881913IPR002885Pentatricopeptide repeat
PfamPF015350.0043881910IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-12905965IPR011990Tetratricopeptide-like helical domain
PfamPF130415.9E-17913960IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.666913947IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.4E-11915947IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.106948982IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.019831017IPR002885Pentatricopeptide repeat
PfamPF138127.7E-910061065IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.21310181052IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-710201054IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-1210211184IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF819016.54E-910281233No hitNo description
PROSITE profilePS5137512.02510531087IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-710551089IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.21310881122IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.5E-610901123IPR002885Pentatricopeptide repeat
PfamPF130418.0E-1310911136IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.04911231157IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.4E-811251158IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.86311581192IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-611611194IPR002885Pentatricopeptide repeat
PfamPF015352.9E-411621186IPR002885Pentatricopeptide repeat
PfamPF130412.0E-1511921240IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.15411931227IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-711951229IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.47912281262IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001312301253IPR002885Pentatricopeptide repeat
PfamPF128545.5E-1212591291IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.53712631297IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.9E-912651298IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.99412981328IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-713011329IPR002885Pentatricopeptide repeat
PfamPF171777.4E-1513041465IPR033443Pentacotripeptide-repeat region of PROPR
Gene3DG3DSA:1.25.40.102.7E-513071362IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF819013.4E-513091469No hitNo description
PROSITE profilePS5137512.47413321366IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-813351367IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.49813671401IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-613691402IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.7E-514001464IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.34214021436IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.3E-1014041438IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.17714371471IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1488 aa     Download sequence    Send to blast
MLPGMVWTED GTGEGETESW AQNINESGGM TNEEELGIGA VSNFKSMLGA EEEGWYIGGG  60
GGSATGTTRD HIGSVNGISF SSGFPEADSS QLFLQTVDSS ASCSPTSASV FSNLDPCDQV  120
NYFLPPKYLM NPLLNNTALE GGFDSGCGNG YLENVLNRGG GILGDGFGDL SAQAQFGAFN  180
LSSTANLLQF PQASGGFGAF GYGESSIQGN SLFNRFKILK PLDNFASLGA QPTLFQKRAA  240
LKKNLIDNDS KNLGSLNLGG DLNEMSLISP NSSTFMEEYD KKRKLSDVSI EESNLNYDSD  300
DQFLENCGIN KVEGSGKNGG NDSNANSTVT GGKKKGLPAK NLMAERRRRK KLNDRLYMLR  360
SVVPKISKMD RASILGDAID YLKELLQKIN DLHNELESTP SSSSPTPSLN FYPVTPTGPR  420
VSSLVKEELC PQATLPNPVS IPTGQPAKVE VRLREGRAVN IHMFCGRRPG LLLSTMRALD  480
NLGLDIQQAV ISCFNGFALD IFRAEQCKQG QDLHPDQIKA ILLDSAAFHG VIRGEIRNFK  540
KMVPLFSPGG CNMGIYERQL IKKIRLLCVT IKSRRYSHSP GEIEVTAAEI TRILKHNNWQ  600
FLLESSHIPQ RLNYDVVNTV LQRTHFSIHP RRLLDFYRWS NQHLGNPQNL PSLSILALVL  660
CSSNLYSPAI NVLGEMIDAR VPVSDILSSI LNLYNECQRF RSVPVVFELL IDVYRRKGMW  720
SEAVSVFLGV QGGDVDISLL CCNSLLNDLL KSNRIELFWK VHGGMMEKKI NFDLYTYTSV  780
VSAYCKGGNI IEAKRVLIEM GENGCDPNTI TYNVLIKGLC GIGAVDEALQ QKMKMLEKGL  840
APDGYTYTIL IDGFCKHKRS LEAKLILEEM CERGLNPDHI AYTALISGLM KDGAVDDAFL  900
IKDAMLERGI KLNLVTYNAL IHGLCKCGHM DKAVDLIHEM IKKGVHPETQ TYNYLIEGYS  960
RQSDMDKVSE MLIWMNERNL TPSAYTFGAI INELSRLGDR QKVNLLLEKM MVGGIKPTAV  1020
IYTTIIKAYV REGKYEEAIK ILDDMWQEET LPDVFCYNSI VIGLCKEKRT DEARSCLIQM  1080
RERGLLPNAY TYGALVSGYM EAGQLQVAES YFMEMLDQNI APNLYTYTTL IDGLCKHGNT  1140
TQAFSLFSHM LARRLLRDVE LYSVLINGLS KNGKLVEAMR VFSKFCDNRL VPDVYIYTSL  1200
ISGFCRQGDM IQAFKLHDAM RQKGINPNIV TYNALIGGFL RSGEIKRAEE LFAGLSNICL  1260
KPNEVTYATM IDGYCKSENL DRAFLLLEEM SSKGVQPDGF VYNSIVNGCC KQGDMENAMS  1320
MFNGMMERSM ASVMTFNTLI GGFCKLGNLT KAVELVKDMV EKNIMPNHIT FTIIIDHYSK  1380
KGMMKEAEKL LLEMENRNIM PTNVTYTSLL HGYGKMGNWS KMLALFNDLV EKGIEPDEVV  1440
YRLIIDAHYE EGNSDKAFKV LNELFDKGDF ENNMDLFGRV TQAVASQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-10269114802451pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332350KKKGLPAKNLMAERRRRKK
2344351ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073190.10.0pentatricopeptide repeat-containing protein At5g61990, mitochondrial
RefseqXP_020548519.10.0pentatricopeptide repeat-containing protein At5g61990, mitochondrial
RefseqXP_020548520.10.0pentatricopeptide repeat-containing protein At5g61990, mitochondrial
RefseqXP_020548521.10.0pentatricopeptide repeat-containing protein At5g61990, mitochondrial
TrEMBLA0A2Z7AQY80.0A0A2Z7AQY8_9LAMI; Pentatricopeptide repeat-containing protein mitochondrial-like
STRINGMigut.I00614.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-105bHLH family protein