PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21831.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 133aa    MW: 15635 Da    PI: 9.6539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21831.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-065175223
                EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                kC+   C+  Fs++snL++Hi+  H
  KZV21831.1 51 KCSfsGCTSAFSTRSNLNQHIKAvH 75
                799999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355222142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.06E-93285No hitNo description
Gene3DG3DSA:3.30.160.601.6E-83272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00145075IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8845080IPR007087Zinc finger, C2H2
PROSITE patternPS0002805275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MRYFSNEQCL KEHLRSCHQY IFCDECGTKQ LKKNIKRHLR MHEGVCREQI KCSFSGCTSA  60
FSTRSNLNQH IKAVHMKLKP FTCSIGNFEE SDEQFRSRPR GGRKRKYPII ESLLRKRVVP  120
PNVEEITMNG DPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21831.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.13e-63transcription factor IIIA
SwissprotQ84MZ42e-39TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2Z7AJ803e-94A0A2Z7AJ80_9LAMI; Transcription factor IIIA-like
STRINGMigut.K00168.1.p3e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-42transcription factor IIIA