PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21879.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 220aa    MW: 24851.2 Da    PI: 9.7537
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21879.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-20109159155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdp+    r +r++lg++ taeeAa  +++a+ +++g
  KZV21879.1 109 KKFRGVRRRP-WGKWAAEIRDPT----RrTRVWLGTYETAEEAALVYDEAAIRIHG 159
                 59********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.1E-435213IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.08E-33109166No hitNo description
SMARTSM003801.4E-36110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.762110167IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22110167IPR016177DNA-binding domain
PfamPF008471.4E-13110159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-30110167IPR001471AP2/ERF domain
PRINTSPR003671.1E-10111122IPR001471AP2/ERF domain
PRINTSPR003671.1E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MIPRDTKRIK YSVHTTITTK VVSPPPLKET CKGSFSSKTP RLVRISVTDY DATDSSSDEC  60
ESEQNYLRVR KLMNEVRVEI NGHGSSVDVK KKTKKQRSMQ EHDLVGEGKK FRGVRRRPWG  120
KWAAEIRDPT RRTRVWLGTY ETAEEAALVY DEAAIRIHGR KAVTNFMAPP EMATTEPSGV  180
PVSCYDKESC HDKLCSPMSV LRFSNDHDSS NCGRSGSVRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22106166162ATERF1
3gcc_A6e-22106166162ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094793.13e-56pathogenesis-related genes transcriptional activator PTI6
RefseqXP_012844004.12e-56PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2Z7AR941e-162A0A2Z7AR94_9LAMI; Uncharacterized protein
STRINGMigut.B01832.1.p7e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-46cytokinin response factor 4