PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV22475.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 226aa    MW: 25468.1 Da    PI: 8.3898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV22475.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-1354100354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+Er+RR+riNs +++Lr++lP +      K +Ka+ L ++v+ +k+L
  KZV22475.1  54 ENHREAERKRRKRINSHLDRLRDILPCS-----SKTDKASLLAHVVQRVKEL 100
                 68*************************8.....6************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.56751100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1353114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1154100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1354111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1057106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.13E-464103No hitNo description
Gene3DG3DSA:3.30.70.2607.5E-4138189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQQRHSPEVS ALHRFLSENG LSYCFPAMQS FCCLPDVPEM VDRPDEARGL AAAENHREAE  60
RKRRKRINSH LDRLRDILPC SSKTDKASLL AHVVQRVKEL NQQTSQIKNS DQTIPSESDE  120
VSITKDDNFH GESVVKASLC CEDRVDLIPE LIGVLKSLNL IPLRAEMVTL GGRMKNVIIL  180
KGEKNSMDES GLFLRDELKR LVLSSANRGD GGNLKRRRRF DSFSGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV22475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852366.18e-79transcription factor bHLH106-like
SwissprotO806742e-49BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2Z7AKX81e-164A0A2Z7AKX8_9LAMI; DNA binding protein
STRINGMigut.J01640.1.p1e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]