PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV22609.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 236aa MW: 25931 Da PI: 9.9426

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV22609.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H KZV22609.1 93 FSCNYCSRKFYSSQALGGHQNAH 115 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.54E-6	90	120	No hit	No description
PROSITE profile	PS50157	11.655	93	120	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MESPRLEPCN CSDTSTGIIS SPSSPCLKLE SSKKQTHMQM EESHVQESTS FDLVLDLSLS 60 NKDPVQELSL LRSQNSSSDP KSGGNNESEH RVFSCNYCSR KFYSSQALGG HQNAHKRERT 120 IAKRAGGIAS FAHRFSSMAS LPLHGSSNTS LGIQVHSMVQ KPGFFGFSTP SSSTFGRWPR 180 IWPPSSGKAA RFDGGRKLSP AAMDGSGRFR WDSSSLYLKI HNDQKDTKKL DLSLKL

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV22609.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082208.1	1e-57	zinc finger protein 1
Swissprot	Q42485	4e-32	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	A0A2Z7AT60	1e-173	A0A2Z7AT60_9LAMI; Zinc finger protein 1
STRING	VIT_09s0002g09080.t01	2e-53	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-28	C2H2 family protein

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]