PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV23335.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

WRKY

Protein Properties

Length: 584aa MW: 63722.9 Da PI: 6.4468

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV23335.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.4	3.4e-29	249	306	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ ed +v+++tYeg+Hnh+ KZV23335.1 249 DGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCVEDMSVLITTYEGTHNHP 306 9************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.1E-30	233	308	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-26	239	308	IPR003657	WRKY domain
PROSITE profile	PS50811	27.68	242	308	IPR003657	WRKY domain
SMART	SM00774	4.1E-35	247	307	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	249	306	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
METSLHKSLL ETVVKEEENR GSSNDDDGGF RDESILLQGE TKVERSSPTK SESRTASFVK 60 REQMEQLQLA KSEMVEVMEE NQRLRSYLDR ILKDYRTLQN QYKEAIQQEG NTKCGNEDSI 120 ASADQPEEAE LVSLSLGRSS SETTTKEGPR KMPTNERIRQ DDREGLALGL DCKFEVPKTS 180 SQVEYPSREN SLEEVRNETG DTTTTWSPHK SSTKNSRSDG EDDELLQQNH AKRARVSVRY 240 RCDTPTMIDG CQWRKYGQKI SKGNPCPRAY YRCTVAPSCP VRKQVQRCVE DMSVLITTYE 300 GTHNHPLPIS ATAVASTTSA AVSMLMSGSS TSGVGPSSSS IPTSSTTSTN LNGLNFYLPN 360 NSRSKPFYLP TTSISSSPSH PTITLDLTSP SSTSSPHLNR LGSNIPSRFS STNLNFSSLE 420 SSSLPVSWNN ATLGYGNKII QTPNSLSFGT QNSETLYHSF MQKNIRNPNV QQSDHTPDTI 480 AAATKAITSD PSFQSALAAA LTSLIGSGLA GASSSANQNG SDISSQNIKN TESFPILSSF 540 PTTSSVSNST SSQHGSLRFL SPSFPFTNTQ SKSNSPGDDR DHNV

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

METSLHKSLL ETVVKEEENR GSSNDDDGGF RDESILLQGE TKVERSSPTK SESRTASFVK  60
REQMEQLQLA KSEMVEVMEE NQRLRSYLDR ILKDYRTLQN QYKEAIQQEG NTKCGNEDSI  120
ASADQPEEAE LVSLSLGRSS SETTTKEGPR KMPTNERIRQ DDREGLALGL DCKFEVPKTS  180
SQVEYPSREN SLEEVRNETG DTTTTWSPHK SSTKNSRSDG EDDELLQQNH AKRARVSVRY  240
RCDTPTMIDG CQWRKYGQKI SKGNPCPRAY YRCTVAPSCP VRKQVQRCVE DMSVLITTYE  300
GTHNHPLPIS ATAVASTTSA AVSMLMSGSS TSGVGPSSSS IPTSSTTSTN LNGLNFYLPN  360
NSRSKPFYLP TTSISSSPSH PTITLDLTSP SSTSSPHLNR LGSNIPSRFS STNLNFSSLE  420
SSSLPVSWNN ATLGYGNKII QTPNSLSFGT QNSETLYHSF MQKNIRNPNV QQSDHTPDTI  480
AAATKAITSD PSFQSALAAA LTSLIGSGLA GASSSANQNG SDISSQNIKN TESFPILSSF  540
PTTSSVSNST SSQHGSLRFL SPSFPFTNTQ SKSNSPGDDR DHNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-18	249	308	19	77	Probable WRKY transcription factor 4
2ayd_A	3e-18	249	308	16	74	WRKY transcription factor 1
2lex_A	4e-18	249	308	19	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV23335.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071617.1	1e-178	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-134	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2Z7ANH7	0.0	A0A2Z7ANH7_9LAMI; Putative WRKY transcription factor 72
STRING	XP_010256554.1	1e-154	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	8e-63	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]