PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23531.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 188aa    MW: 21014.8 Da    PI: 9.6454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23531.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000135274123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F ++  L  H++ H
  KZV23531.1 52 FECQYCSKEFGNSQALGGHQNAH 74
                89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-54878IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-64979No hitNo description
PfamPF139123.3E-65276IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.785279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSGFEEHTSK SCKEKKLRLF GFELEQAENS VERDESVNSS SLSSEKSSTK KFECQYCSKE  60
FGNSQALGGH QNAHKKERMR KKRLQLQARK AGINYCIQPF YMNNNSSKRS HHSNCCGPNS  120
PCHVSDNDGS QISSMIPYVP NLDPKGLKIL TWGKQNTTKF SLTIGSGSKP TIMPYSAAMP  180
LDLQLRLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021818944.11e-39zinc finger protein 5-like
TrEMBLA0A2Z7ANZ61e-137A0A2Z7ANZ6_9LAMI; Uncharacterized protein
STRINGEMJ281096e-38(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.16e-14C2H2 family protein