PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV23612.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

SBP

Protein Properties

Length: 1079aa MW: 119001 Da PI: 6.9796

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV23612.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.4e-41	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ KZV23612.1 157 RCQVDNCKEDLSTAKDYHRRHKVCEVHSKASKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 234 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-34	152	219	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.163	155	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-37	156	235	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.0E-30	158	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.97E-5	870	967	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1079 aa Download sequence Send to blast
MEDAGAQVAT PVVIPQPHAG IFYNVHPVAK KRGPPFNPIN FVHQNPSENW NPLSWDWDST 60 SFVAKQLHSD GIFVGSDPHI QQDLPRSMEV QNNNVQNAKN PDRNGEDDEN LSLKLGAGDG 120 VGPSGSTGAM DVVEPQAVSR PNKRVRAGSP GGASYPRCQV DNCKEDLSTA KDYHRRHKVC 180 EVHSKASKAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPDDSTQR 240 LLVPDNRNNN MNCDLDIVSL LAVLARAQGN IEDQNGKFSQ VPDKDQLIQI LNKINSLPLP 300 ADAATKLPVE KSSNGSVHNL PSSENQNRVI ANAPSPSTLD LLAVLSATSG APSSDAFEIQ 360 SQPSTEESGS EKSKSPCVDQ AVSIDLQRGS IVEVPTMGER SGTTYHYPTE DVDCLVQETP 420 SLPLQLFSSS PEDDSGGKLQ SGGKTCFSSG SSNPSEGRSP VSSPPIVHDL FPIHTSKETM 480 KHVNMPSRGN MKASISNNCN TSLQLFGRSV RTNENGSIPN SPYHAGYSSS CGSDHSPSRQ 540 LSDVQDRTGR IVFKLFDKDP SHLPGSLRAQ IFNWLSSSPS EMESYIRPGC IVLSIYLSMS 600 SFAWEQFEKN LLQYVKSLVR GVDVEFWRNG RFLIHTDRRM ASYKDGSIRL CKSWRGWSTP 660 ELIWVSPVAV VGGQETSVLL RGKKLTTPGT KIYCTHPDGY NASLVPALLH QDSATDELVL 720 GGLKVNLATP NTLGRCFIEV ENNIRGTCFP VIIADDHICQ ELRLLEPDIV GSAEVHEGVD 780 HNQNRDRPMS REEALHFLNE LGWLFQRKHN STLLMSPEYK LSRLQFLLTF SVERDFCSVV 840 ETLLGIVVEY NLGRGNLARE SLEMLAESHL LNMAVKRRCR RMVDLLIHYS VFNSTDHSEM 900 FIFVPNMAGP GGVTPLHLAA CTSSADDIVD ALTSDPKEIG LDCWNSLLDS NGFSPYAYAL 960 MRNNNSYNSL VAQKYAKRKM GQVSISIDNE IVPFELEVNK DKSTVSNLYQ GGRSCSRCAL 1020 VAGYSKKFPN SQGLLQPPFI HSLLVVAAVC VCVCVFLRVL PYLSSVAPFA WENLDYGAM

Sequence ? help Back to Top

Protein Sequence Length: 1079 aa Download sequence Send to blast

MEDAGAQVAT PVVIPQPHAG IFYNVHPVAK KRGPPFNPIN FVHQNPSENW NPLSWDWDST  60
SFVAKQLHSD GIFVGSDPHI QQDLPRSMEV QNNNVQNAKN PDRNGEDDEN LSLKLGAGDG  120
VGPSGSTGAM DVVEPQAVSR PNKRVRAGSP GGASYPRCQV DNCKEDLSTA KDYHRRHKVC  180
EVHSKASKAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPDDSTQR  240
LLVPDNRNNN MNCDLDIVSL LAVLARAQGN IEDQNGKFSQ VPDKDQLIQI LNKINSLPLP  300
ADAATKLPVE KSSNGSVHNL PSSENQNRVI ANAPSPSTLD LLAVLSATSG APSSDAFEIQ  360
SQPSTEESGS EKSKSPCVDQ AVSIDLQRGS IVEVPTMGER SGTTYHYPTE DVDCLVQETP  420
SLPLQLFSSS PEDDSGGKLQ SGGKTCFSSG SSNPSEGRSP VSSPPIVHDL FPIHTSKETM  480
KHVNMPSRGN MKASISNNCN TSLQLFGRSV RTNENGSIPN SPYHAGYSSS CGSDHSPSRQ  540
LSDVQDRTGR IVFKLFDKDP SHLPGSLRAQ IFNWLSSSPS EMESYIRPGC IVLSIYLSMS  600
SFAWEQFEKN LLQYVKSLVR GVDVEFWRNG RFLIHTDRRM ASYKDGSIRL CKSWRGWSTP  660
ELIWVSPVAV VGGQETSVLL RGKKLTTPGT KIYCTHPDGY NASLVPALLH QDSATDELVL  720
GGLKVNLATP NTLGRCFIEV ENNIRGTCFP VIIADDHICQ ELRLLEPDIV GSAEVHEGVD  780
HNQNRDRPMS REEALHFLNE LGWLFQRKHN STLLMSPEYK LSRLQFLLTF SVERDFCSVV  840
ETLLGIVVEY NLGRGNLARE SLEMLAESHL LNMAVKRRCR RMVDLLIHYS VFNSTDHSEM  900
FIFVPNMAGP GGVTPLHLAA CTSSADDIVD ALTSDPKEIG LDCWNSLLDS NGFSPYAYAL  960
MRNNNSYNSL VAQKYAKRKM GQVSISIDNE IVPFELEVNK DKSTVSNLYQ GGRSCSRCAL  1020
VAGYSKKFPN SQGLLQPPFI HSLLVVAAVC VCVCVFLRVL PYLSSVAPFA WENLDYGAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-33	148	231	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV23612.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083361.1	0.0	squamosa promoter-binding-like protein 14
TrEMBL	A0A2Z7AWK1	0.0	A0A2Z7AWK1_9LAMI; Squamosa promoter-binding-like protein 14
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14