PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV23864.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 922aa MW: 104203 Da PI: 6.8058

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV23864.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121	6.4e-38	47	147	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++C++apyf ++q +++fa+vh++FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+aela+++ KZV23864.1 47 PCGACKFLRRKCLRGCIFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPPHRRFDAVITLCYEALARVRDPVYGCVGHIFSLQQQVVSLQAELAYIQ 145 7*********************9989******************************************************************998 PP DUF260 99 ee 100 ++ KZV23864.1 146 AR 147 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.254	46	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-36	47	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03999	3.6E-103	276	833	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MHSLFFTLKP EFLLPVRHNL LRPEEGMNVC GGGFGGAGDQ SPGAGGPCGA CKFLRRKCLR 60 GCIFAPYFDS DQGTAHFAAV HRVFGASNAS KLLLRIPPHR RFDAVITLCY EALARVRDPV 120 YGCVGHIFSL QQQVVSLQAE LAYIQARIST LQRSSSVLPL PSNVSSEVDQ ASRLDMCDQQ 180 EEMSMEIVSF GDLHEFIEEV PDLVKLLLFT PFDFAFSETK GCLCKNSHRM HQPSQMETTC 240 GSLLSELQRI WDEIGEPDSE RDQMLFELEQ ECLEAYRRKV DQANHCRAQM RQSLADSETQ 300 LVEICAALGD QPVHIMKSSG SLNEKLQDIM PQLEDIKKKR NERKGQFAEV MKQINIISME 360 LSGSMENKVI IDESDLSLKS LNDLENQLRL LQKEKSERLK HVLGRLNVLN SLCVVLGMDY 420 KLRIRDIHPT LEDSHGTKSI SVDTVERLSS TIHRLKDVKL QRMQKLQHLA MTMVELWNLM 480 DTPLEEQQNF QNVTRTIAAS EDEITEPNTL SLDFINNIEA EVTRLEEMKS SKMKEVLSKK 540 RMVLEEICRE AHMAVKAQYT TDISVEAVES EEFNPSYLLE QLEFQISNAK EEAFSRKEIL 600 EKVDKWLAAC EEECWLEEYN RDENRYNAGR GTHLLLKRAE KARTLVNKIS GMVETLKSKA 660 KAWEMERGTE FLYDGVGLMS MIEQYCDIKH LKEQERQRQR DQKKLQGQLM TEQEAMFGSK 720 QSPSKSVNKN SRPLTGKRFS LGGAMLQNML VEKVGPHSSS KNNHAKQPGS RSHHHSGLMV 780 HSSGKKSISS SPLKQQSSNA NNTQHIGSSP IRKPLSPLSS FSSNMASFDF KDQNLKSVEY 840 QDTHNVCKTP AEKILSCMNH SHTPKTMTIP MPTPPPTVST AMQITMTPFS QLVGGTQVVD 900 YSCEEIRAGF IVPQSHSNVS HQ

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MHSLFFTLKP EFLLPVRHNL LRPEEGMNVC GGGFGGAGDQ SPGAGGPCGA CKFLRRKCLR  60
GCIFAPYFDS DQGTAHFAAV HRVFGASNAS KLLLRIPPHR RFDAVITLCY EALARVRDPV  120
YGCVGHIFSL QQQVVSLQAE LAYIQARIST LQRSSSVLPL PSNVSSEVDQ ASRLDMCDQQ  180
EEMSMEIVSF GDLHEFIEEV PDLVKLLLFT PFDFAFSETK GCLCKNSHRM HQPSQMETTC  240
GSLLSELQRI WDEIGEPDSE RDQMLFELEQ ECLEAYRRKV DQANHCRAQM RQSLADSETQ  300
LVEICAALGD QPVHIMKSSG SLNEKLQDIM PQLEDIKKKR NERKGQFAEV MKQINIISME  360
LSGSMENKVI IDESDLSLKS LNDLENQLRL LQKEKSERLK HVLGRLNVLN SLCVVLGMDY  420
KLRIRDIHPT LEDSHGTKSI SVDTVERLSS TIHRLKDVKL QRMQKLQHLA MTMVELWNLM  480
DTPLEEQQNF QNVTRTIAAS EDEITEPNTL SLDFINNIEA EVTRLEEMKS SKMKEVLSKK  540
RMVLEEICRE AHMAVKAQYT TDISVEAVES EEFNPSYLLE QLEFQISNAK EEAFSRKEIL  600
EKVDKWLAAC EEECWLEEYN RDENRYNAGR GTHLLLKRAE KARTLVNKIS GMVETLKSKA  660
KAWEMERGTE FLYDGVGLMS MIEQYCDIKH LKEQERQRQR DQKKLQGQLM TEQEAMFGSK  720
QSPSKSVNKN SRPLTGKRFS LGGAMLQNML VEKVGPHSSS KNNHAKQPGS RSHHHSGLMV  780
HSSGKKSISS SPLKQQSSNA NNTQHIGSSP IRKPLSPLSS FSSNMASFDF KDQNLKSVEY  840
QDTHNVCKTP AEKILSCMNH SHTPKTMTIP MPTPPPTVST AMQITMTPFS QLVGGTQVVD  900
YSCEEIRAGF IVPQSHSNVS HQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-39	37	141	1	104	LOB family transfactor Ramosa2.1
5ly0_B	5e-39	37	141	1	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Microtubule-associated protein that plays a critical role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs. Essential for the cytokinesis, especially in roots, by maintaining the integrity of the overlapped microtubules in the phragmoplast. Required during root morphogenesis. Needed for giant cell development during root knot nematode infection, where cytokinesis is initiated but not completed. {ECO:0000269\|PubMed:12068111, ECO:0000269\|PubMed:12226511, ECO:0000269\|PubMed:15028217, ECO:0000269\|PubMed:18263774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV23864.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093199.1	0.0	65-kDa microtubule-associated protein 3
Swissprot	Q9FHM4	0.0	MA653_ARATH; 65-kDa microtubule-associated protein 3
TrEMBL	A0A2Z7APS7	0.0	A0A2Z7APS7_9LAMI; 65-kDa microtubule-associated protein 3-like
STRING	Migut.N01637.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	1e-55	LOB domain-containing protein 19

Publications ? help Back to Top
Söllner R, et al. Cytokinesis-defective mutants of Arabidopsis. Plant Physiol., 2002. 129(2): p. 678-90 [PMID:12068111] Müller S, et al. Two new loci, PLEIADE and HYADE, implicate organ-specific regulation of cytokinesis in Arabidopsis. Plant Physiol., 2002. 130(1): p. 312-24 [PMID:12226511] Hussey PJ,Hawkins TJ,Igarashi H,Kaloriti D,Smertenko A The plant cytoskeleton: recent advances in the study of the plant microtubule-associated proteins MAP-65, MAP-190 and the Xenopus MAP215-like protein, MOR1. Plant Mol. Biol., 2002. 50(6): p. 915-24 [PMID:12516862] Müller S, et al. The plant microtubule-associated protein AtMAP65-3/PLE is essential for cytokinetic phragmoplast function. Curr. Biol., 2004. 14(5): p. 412-7 [PMID:15028217] Van Damme D,Bouget FY,Van Poucke K,Inzé D,Geelen D Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins. Plant J., 2004. 40(3): p. 386-98 [PMID:15469496] Caillaud MC, et al. MAP65-3 microtubule-associated protein is essential for nematode-induced giant cell ontogenesis in Arabidopsis. Plant Cell, 2008. 20(2): p. 423-37 [PMID:18263774] Smertenko AP, et al. The C-terminal variable region specifies the dynamic properties of Arabidopsis microtubule-associated protein MAP65 isotypes. Plant Cell, 2008. 20(12): p. 3346-58 [PMID:19060108] Sasabe M,Kosetsu K,Hidaka M,Murase A,Machida Y Arabidopsis thaliana MAP65-1 and MAP65-2 function redundantly with MAP65-3/PLEIADE in cytokinesis downstream of MPK4. Plant Signal Behav, 2011. 6(5): p. 743-7 [PMID:21455028] Ho CM, et al. Interaction of antiparallel microtubules in the phragmoplast is mediated by the microtubule-associated protein MAP65-3 in Arabidopsis. Plant Cell, 2011. 23(8): p. 2909-23 [PMID:21873565] Ho CM,Lee YR,Kiyama LD,Dinesh-Kumar SP,Liu B Arabidopsis microtubule-associated protein MAP65-3 cross-links antiparallel microtubules toward their plus ends in the phragmoplast via its distinct C-terminal microtubule binding domain. Plant Cell, 2012. 24(5): p. 2071-85 [PMID:22570443] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Paganelli L, et al. Three BUB1 and BUBR1/MAD3-related spindle assembly checkpoint proteins are required for accurate mitosis in Arabidopsis. New Phytol., 2015. 205(1): p. 202-15 [PMID:25262777] Abu-Abied M, et al. Analysis of Microtubule-Associated-Proteins during IBA-Mediated Adventitious Root Induction Reveals KATANIN Dependent and Independent Alterations of Expression Patterns. PLoS ONE, 2015. 10(12): p. e0143828 [PMID:26630265] Gillmor CS,Roeder AH,Sieber P,Somerville C,Lukowitz W A Genetic Screen for Mutations Affecting Cell Division in the Arabidopsis thaliana Embryo Identifies Seven Loci Required for Cytokinesis. PLoS ONE, 2016. 11(1): p. e0146492 [PMID:26745275] Quentin M, et al. The Arabidopsis microtubule-associated protein MAP65-3 supports infection by filamentous biotrophic pathogens by down-regulating salicylic acid-dependent defenses. J. Exp. Bot., 2016. 67(6): p. 1731-43 [PMID:26798028] Steiner A, et al. Cell cycle-regulated PLEIADE/AtMAP65-3 links membrane and microtubule dynamics during plant cytokinesis. Plant J., 2016. 88(4): p. 531-541 [PMID:27420177] Li H, et al. Arabidopsis MAP65-4 plays a role in phragmoplast microtubule organization and marks the cortical cell division site. New Phytol., 2017. 215(1): p. 187-201 [PMID:28370001] Herrmann A, et al. Dual localized kinesin-12 POK2 plays multiple roles during cell division and interacts with MAP65-3. EMBO Rep., 2019. [PMID:30002118]