PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV23865.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 253aa MW: 26350.9 Da PI: 7.8402

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV23865.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128	4.4e-40	31	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r d + +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+ KZV23865.1 31 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDSVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQ 129 7*********************9989******************************************************************999 PP DUF260 99 ee 100 ++ KZV23865.1 130 AH 131 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.687	30	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.8E-39	31	129	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MSAANVPSSS TASGGGGSGG GGGGGGGSGG PCGACKFLRR KCVAGCIFAP YFDSEQGAAH 60 FAAVHKVFGA SNVSKLLLHI PVHKRLDSVV TICYEAQARL RDPVYGCVAH IFALQQQVVN 120 LQAELSYLQA HLATLELPAP PPAPPQPQPL LMPPALSISD LPTSSIAPAT YDLSSLLDPM 180 MLNPWNSLQH QRQQIDPRHF SSAAAGSSPE IPSSDPAAGG GDLQELAREL INRHANPTVT 240 CRKHASTMPP QPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-37	27	132	7	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-37	27	132	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	27	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV23865.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795320.1	1e-100	PREDICTED: LOB domain-containing protein 30
Refseq	XP_016488575.1	1e-100	PREDICTED: LOB domain-containing protein 30-like
Swissprot	O81323	2e-78	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A2Z7APU3	0.0	A0A2Z7APU3_9LAMI; LOB domain-containing protein 18
STRING	XP_009795320.1	1e-99	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	3e-76	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]