PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV24018.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 1121aa MW: 124957 Da PI: 7.7355

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV24018.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.8e-08	5	36	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 W++eE ++++a +++G++ Wk++++ + +R+ KZV24018.1 5 QWSQEELIRFYEAYRKYGKD-WKKVSAAVR-NRS 36 6***************99.****999.997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.469	1	54	IPR017884	SANT domain
SuperFamily	SSF46689	1.05E-9	4	49	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-4	5	37	IPR009057	Homeodomain-like
Pfam	PF00249	6.3E-7	5	36	IPR001005	SANT/Myb domain
CDD	cd00167	1.38E-4	6	36	No hit	No description
SMART	SM01135	9.0E-55	603	704	IPR033471	DIRP domain
Pfam	PF06584	2.3E-31	604	703	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence Send to blast
MLGSQWSQEE LIRFYEAYRK YGKDWKKVSA AVRNRSFEMV EALYSMNRAY LSLPEGTASK 60 AGLIAMMTDH YSNLGGSDSE QESNDGAGSS RKTQKRARGK IQPTASKVAD EKFVSHSQTV 120 ASNYGCLSLL KKKRTGGTRP RPVGKRTPRF PVSFSGENNT GDKYFSPTRQ GLKIKANADD 180 DEVAHEIAMA LAEASQRGGS PQVSRTPSRR TESVISSPIR SGQRKHSAEE MLDAKIWGED 240 MGEEDLEGST EGDTGELFKH KPSMVETGSI DTARQKGRKL IAKKFEVDEN NENNLDEEEC 300 SGTEEGLRIG EIKGKFDVEV TDAKILRSSL PRQRKKSKKV LFKRDDEGAA FDALKALADL 360 SLMLPTENED ESIMPFNDEG DDHVDESGSL EAMPANQQKE KHSSSRVRMK GCKSSLGVAS 420 SKTTKPGKVS VYNESSVPEE QDMSRVVTKC VRKKQRIQTS KIEKTDATSD MHLSESSGIE 480 AHDVGKKLAS KSKKTSQSGS PNLMKISENS GAVLRKEGSD SAQSALQDPL ANQVNLATKV 540 RSRRKMNLKK PQAQKDLKFY DKIQNDHSTL HLASVHDKAD LKGKISNCLV NPRLRRWCTY 600 EWLYSAIDSP WFAKREFVEY LYHVGLGHVP RLTRAEWGVI RSSLGRPRRF SEQFLKEEKE 660 KLDQYRDSVR KHYTELREGV RDGLPTDLAR PLSVGQRVIA IHPKTREVHD GSVLTVDHSR 720 CRVQFDRHEL GVEFVTFAND KQPRWHAAYG KLDIDCMPLY PSENMPSTLG RHTVAADKFL 780 ENFNELQING RSKEYMKLSS SDILESIDGL VDHEIEPSQP IFRAFPTMLT SATANVQSKA 840 GPGEIASYQQ TAQYQPTVAP NQANEADIEA LAELTRALDK KEGIVLELRN MNDDVLKHQK 900 DDDISLKDSE SFRKQYAAVL VQLNEANEQV SSALHCLRLR NTYQGSSPHK FTKPVPSSGD 960 PVDRSACQHN GAGSHVIEIM DSSKTKARIL VDAAMQALSS LKVKEDSVEK IEEAIDYVND 1020 YLPSDESCMP STPDSKVANS SNIEPQIPLE LITRCIATLL MIQKCTERQS PPEDVAKILD 1080 SALTSLRPCS SQNLPIYDEI QKCMGIIKNQ ILALMPTVSQ S

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence Send to blast

MLGSQWSQEE LIRFYEAYRK YGKDWKKVSA AVRNRSFEMV EALYSMNRAY LSLPEGTASK  60
AGLIAMMTDH YSNLGGSDSE QESNDGAGSS RKTQKRARGK IQPTASKVAD EKFVSHSQTV  120
ASNYGCLSLL KKKRTGGTRP RPVGKRTPRF PVSFSGENNT GDKYFSPTRQ GLKIKANADD  180
DEVAHEIAMA LAEASQRGGS PQVSRTPSRR TESVISSPIR SGQRKHSAEE MLDAKIWGED  240
MGEEDLEGST EGDTGELFKH KPSMVETGSI DTARQKGRKL IAKKFEVDEN NENNLDEEEC  300
SGTEEGLRIG EIKGKFDVEV TDAKILRSSL PRQRKKSKKV LFKRDDEGAA FDALKALADL  360
SLMLPTENED ESIMPFNDEG DDHVDESGSL EAMPANQQKE KHSSSRVRMK GCKSSLGVAS  420
SKTTKPGKVS VYNESSVPEE QDMSRVVTKC VRKKQRIQTS KIEKTDATSD MHLSESSGIE  480
AHDVGKKLAS KSKKTSQSGS PNLMKISENS GAVLRKEGSD SAQSALQDPL ANQVNLATKV  540
RSRRKMNLKK PQAQKDLKFY DKIQNDHSTL HLASVHDKAD LKGKISNCLV NPRLRRWCTY  600
EWLYSAIDSP WFAKREFVEY LYHVGLGHVP RLTRAEWGVI RSSLGRPRRF SEQFLKEEKE  660
KLDQYRDSVR KHYTELREGV RDGLPTDLAR PLSVGQRVIA IHPKTREVHD GSVLTVDHSR  720
CRVQFDRHEL GVEFVTFAND KQPRWHAAYG KLDIDCMPLY PSENMPSTLG RHTVAADKFL  780
ENFNELQING RSKEYMKLSS SDILESIDGL VDHEIEPSQP IFRAFPTMLT SATANVQSKA  840
GPGEIASYQQ TAQYQPTVAP NQANEADIEA LAELTRALDK KEGIVLELRN MNDDVLKHQK  900
DDDISLKDSE SFRKQYAAVL VQLNEANEQV SSALHCLRLR NTYQGSSPHK FTKPVPSSGD  960
PVDRSACQHN GAGSHVIEIM DSSKTKARIL VDAAMQALSS LKVKEDSVEK IEEAIDYVND  1020
YLPSDESCMP STPDSKVANS SNIEPQIPLE LITRCIATLL MIQKCTERQS PPEDVAKILD  1080
SALTSLRPCS SQNLPIYDEI QKCMGIIKNQ ILALMPTVSQ S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV24018.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552958.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_020552959.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_020552960.1	0.0	protein ALWAYS EARLY 3-like
TrEMBL	A0A2Z7ARJ4	0.0	A0A2Z7ARJ4_9LAMI; Protein ALWAYS EARLY 3-like
STRING	Migut.G00183.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding