PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24167.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 490aa    MW: 52981.7 Da    PI: 7.9651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24167.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-11147171226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C f+++t tCk+G++CkF H+
  KZV24167.1 147 GEKDCAFYMQTRTCKFGESCKFDHP 171
                 7889********************8 PP
2zf-CCCH33.57e-11197223127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f +t  Ck+G+rCkF+H++
  KZV24167.1 197 PGEPNCPYFVKTQRCKFGARCKFNHPK 223
                 5789*********************96 PP
3zf-CCCH33.95.2e-11244268327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C f+++tG Ck+G +CkF+H++
  KZV24167.1 244 EPPCAFYMKTGNCKFGMTCKFHHPK 268
                 79*********************96 PP
4zf-CCCH37.34.4e-12314337427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 e C+f+++tG CkyG++C+++H++
  KZV24167.1 314 EDCPFYLKTGSCKYGATCRYNHPE 337
                 79********************96 PP
5zf-CCCH41.62e-13398420426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +C+++++tG+Ck+Gd+CkF+H+
  KZV24167.1 398 LECDYYMKTGICKFGDSCKFHHP 420
                 58********************8 PP
6zf-CCCH352.5e-11442463627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+++++tG Ck+G++CkF H+p
  KZV24167.1 442 CPYYMKTGACKFGATCKFDHPP 463
                 ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61145173IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9147171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4151170IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436196224IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8198223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5201225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5202224IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821241269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5244268IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8244268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4246266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756310338IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6311337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6312338IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9314337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5316337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624394422IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6394421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-7397423IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-11399420IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5400420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206436464IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5436463IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5440463IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4442461IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9442463IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MANQLYGYNP SSYGGATTSS LYSSRSISES YLPADTSLRG SAFRFLSADS LSAFYNPDSY  60
STKIPGASVT TSTSSYAPPG VDLGPTITST ESLYAGLKRA SSDSLYHQLG AHNMIGQTEA  120
WYSTNFLAKR PRYESTSNLP IYAQRPGEKD CAFYMQTRTC KFGESCKFDH PIWVPEGGIP  180
DWKEVPLALS ESLPERPGEP NCPYFVKTQR CKFGARCKFN HPKEALQGAS GDIDVSVLPE  240
RPSEPPCAFY MKTGNCKFGM TCKFHHPKGV QIQSAGEEIG AGLQQKVSGD GKSPLFTPAL  300
SHNSKGLPIR LDGEDCPFYL KTGSCKYGAT CRYNHPERNA AHPLSTSITP SLLTSSSPHF  360
NIGAVASAAS LLPAFDPRLT QTMLGFGTSI YPQRPGQLEC DYYMKTGICK FGDSCKFHHP  420
IDRTAMKFTL AGLPRREGAI HCPYYMKTGA CKFGATCKFD HPPPGEVMAA AGTEGASASG  480
VDGVLNGEEV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856887.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2Z7AY030.0A0A2Z7AY03_9LAMI; Zinc finger CCCH domain-containing protein 37-like
STRINGMigut.M01488.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-177floral homeotic protein (HUA1)