PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24220.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 180aa    MW: 20050.1 Da    PI: 8.6446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24220.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102370655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                + +E++RR++++s  ++L +l+P+ +   + +  s  + Le A+ YIk+L+
  KZV24220.1 23 KTVEKNRRNEMKSLCSKLASLVPPrS---HTGTGSLLDQLEVATSYIKKLE 70
                679*********************44...8888***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1371769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-102280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-102384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-72470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-52574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MPINQNASPE MDQNPSSSKP DRKTVEKNRR NEMKSLCSKL ASLVPPRSHT GTGSLLDQLE  60
VATSYIKKLE LNLEKMKQKR NWLMGFNNGG LKPLEIKVNL MGSVVEVILI TGINCQFLFR  120
ETIRVLQEED ADIANACFSV QENTVSHTIH CKIGGSAPEY GAARIAERLR KFVPLADVDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096311.19e-62transcription factor bHLH125
TrEMBLA0A2Z7ATL61e-131A0A2Z7ATL6_9LAMI; Uncharacterized protein
STRINGPOPTR_0011s05320.12e-55(Populus trichocarpa)
STRINGEMJ156978e-56(Prunus persica)
STRINGcassava4.1_021527m8e-56(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-32bHLH family protein