PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24229.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 244aa    MW: 27276.5 Da    PI: 5.2555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24229.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1897147255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  KZV24229.1  97 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFSMRG 147
                 69*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.76E-1996156No hitNo description
PfamPF008475.2E-1397147IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-2297157IPR016177DNA-binding domain
PROSITE profilePS5103222.8497155IPR001471AP2/ERF domain
SMARTSM003801.5E-3697161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2997156IPR001471AP2/ERF domain
PRINTSPR003673.3E-1098109IPR001471AP2/ERF domain
PRINTSPR003673.3E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDSSVFQCNY QYQFQYPLAE YSPESSSLDS PNSLSMEFHD FSLPFNMNDS EEMLLFGVLA  60
EGRVKEPSES NSNSSCKEEE VNSRAKRAGR EEKKEKSYRG VRKRPWGKYA AEIRDSTRNG  120
VRVWLGTFDS AEAAALAYDQ AAFSMRGCAA VLNFPVERVM ESLQEMKCGM EEEGCSPVIA  180
LKKKHSMRKK RSGVSSSSSS SKKISKNQEV GNVMVLEDLG VEYLEELLSC PSSSSSSHDI  240
SIWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-29981621579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185104KRAGREEKKEKSYRGVRKRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24229.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181066.18e-79PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-68ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2Z7AXP61e-178A0A2Z7AXP6_9LAMI; Ethylene-responsive transcription factor 1B
STRINGPGSC0003DMT4000348732e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-47ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]