PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24290.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family G2-like
Protein Properties Length: 401aa    MW: 44524.2 Da    PI: 6.3938
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24290.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.4e-32238292155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r+rWtpeLHe F++av++LGG+++ tPk++l++m+v+gLt++hvkSHLQkYR+
  KZV24290.1 238 KARMRWTPELHEVFLDAVSKLGGNDRVTPKAVLKVMNVEGLTIYHVKSHLQKYRT 292
                 68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.42E-18236292IPR009057Homeodomain-like
PROSITE profilePS5129410.848237295IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-29238294IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-25238292IPR006447Myb domain, plants
PfamPF002492.5E-10240291IPR001005SANT/Myb domain
PfamPF143791.3E-21322369IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MPPILCKKKS SEAQLNGMKV SGPMSPSFGV LPSPFEGKFP KLPDSPQVTL ARELTSNLTS  60
SCPVTLSSSD KTVYSPNSYQ LAKSPIISES LKDGDSFASY QHSLSVMQAS DSSGFSMDSE  120
EVSWTTDTSQ NFLDVPLNVH AQNELVECTG VSASYEHGKK TDWHEWADQL IKVDDALDTN  180
WSDLLVDVNV PDLNTEILEL PPDAHVCHPQ IHQHQNSSTS GGQCCSVLSS PRAAPLTKAR  240
MRWTPELHEV FLDAVSKLGG NDRVTPKAVL KVMNVEGLTI YHVKSHLQKY RTARYKPESS  300
EGKPEKSKNV AEKMSLDLKT TMGMTEALRL QMEVQKQLHE QLEIQRNLQL RIEEQGKHLQ  360
KIFEQQRKME EHKSKTSSQN SNGPTQCQMV ENPPPSPGTS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-28238296260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102186.11e-170protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
TrEMBLA0A2Z7ATT10.0A0A2Z7ATT1_9LAMI; Uncharacterized protein
STRINGPOPTR_0013s04530.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45822139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.22e-81G2-like family protein