PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24324.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LSD
Protein Properties Length: 120aa    MW: 12658.9 Da    PI: 8.215
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24324.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.5e-13731125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCrt+L YP GA++V+Ca+C+ V
  KZV24324.1  7 CSGCRTILLYPSGATNVCCAICNMV 31
                ***********************98 PP
2zf-LSD139.68.5e-134670125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrtlL+  rGA sVRC++C+tV
  KZV24324.1 46 CGGCRTLLMHSRGAASVRCSCCHTV 70
                ************************9 PP
3zf-LSD146.27.4e-1584107124
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                 Cg+C+t+L++P+GApsVRCa+C+ 
  KZV24324.1  84 CGNCHTMLMFPAGAPSVRCAICHY 107
                 **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-12434IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.5E-164373IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.0E-1281109IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1384108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MQNQLVCSGC RTILLYPSGA TNVCCAICNM VTAVPPSGME MAQLVCGGCR TLLMHSRGAA  60
SVRCSCCHTV NLVPAPNHVA HVNCGNCHTM LMFPAGAPSV RCAICHYITR TNVGTSVYNL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551343.14e-65uncharacterized protein LOC105167533
SwissprotQ93ZB13e-50LOL1_ARATH; Protein LOL1
TrEMBLA0A2Z7AR031e-79A0A2Z7AR03_9LAMI; Vacuolar protein sorting-associated protein 22
STRINGXP_009783613.12e-62(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.16e-53lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]