PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24628.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 335aa    MW: 37852.9 Da    PI: 10.0248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24628.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.8e-32268326259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  KZV24628.1 268 ADEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPTMLIVTYEGEHNHQ 326
                 69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.5E-18220265IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-34255327IPR003657WRKY domain
PROSITE profilePS5081130.09262328IPR003657WRKY domain
SuperFamilySSF1182903.4E-27265327IPR003657WRKY domain
SMARTSM007746.7E-39267327IPR003657WRKY domain
PfamPF031062.7E-27269326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQEVEQANSA AIESCHGVID LLFQPQNHSQ RRKLAEKTGE AEYKFQKVFS LLDYRCGHAR  60
VRKLKNIQVP FPHSIFLESP IFRTDDPQPK SLQIYNPLPE SRFNAKTDLT LGCPSLDLCS  120
NGKNPLQIPP SPNYHFPQQQ RFQLQQLRMK QQGELMYRRC SSGLSLNFDN SNCTPNMSST  180
RSFISSISVD GSVANLNGNG NSFHLIGAAR SADQTSYNHR KRCFGNGERG SVKCGGSGRC  240
HCSKKRKHRV KRSIKVPAIS NKLADIPADE YSWRKYGQKP IKGSPHPRGY YKCSSMRGCP  300
ARKHVERCLE DPTMLIVTYE GEHNHQRLPS QSTNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21260329775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24628.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080000.11e-168probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-109WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2Z7ATC40.0A0A2Z7ATC4_9LAMI; Putative WRKY transcription factor 21
STRINGVIT_07s0141g00680.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-103WRKY DNA-binding protein 21