PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24798.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 498aa    MW: 55373 Da    PI: 6.0809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24798.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13352398455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  KZV24798.1 352 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 398
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4149222IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-14351402No hitNo description
SuperFamilySSF474592.36E-18351417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17352417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10352398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-15354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MGNNFWVNEE EKAVVESVLG SEATEYFNWS ASNNVLLEFS ASGGDLGVQQ ALCKIVDGSE  60
WSYAIYWHVS KSKSGKSALI WGDGHCREPK ECDDSEDRKP NEGDQRRQVL QKLHASFGGP  120
EDENVEVNLD QVSAVEMFYL TSMYFAFPFD KPSTPSQSFN SGRLIWASDE KSCLERYQSR  180
SYLGKLAHFE TVAFVPLKSG VVEIGSRKSI PEDPRIIQLA KTIVVKTISA QPKPVPKIFG  240
QELSLGGSKS GPISISFSPK VEDDSVFSSE SCDLQTIGGA KFYGNSSNGH RSDNSETKMF  300
THMNEVIVGG SNSQVLGSKN EPMNEDSLVL SDERKPRKRG RKPANGREEP LNHVEAERQR  360
REKLNQRFYA LRAVVPNISK MDKASLLGDA IAYITDLQTK IRILEAEKGV VNHNQNQQSI  420
PDIDFRDRHE DAVLRVSFPL DTHPVSEVVK TLREHQVMAQ ESTISISDSG QVVHTFSIQT  480
QSGTGEHLKK MLGDALLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29346408264Transcription factor MYC2
5gnj_B3e-29346408264Transcription factor MYC2
5gnj_E3e-29346408264Transcription factor MYC2
5gnj_F3e-29346408264Transcription factor MYC2
5gnj_G3e-29346408264Transcription factor MYC2
5gnj_I3e-29346408264Transcription factor MYC2
5gnj_M3e-29346408264Transcription factor MYC2
5gnj_N3e-29346408264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333341RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24798.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022898255.10.0transcription factor bHLH3-like isoform X1
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2Z7ATV00.0A0A2Z7ATV0_9LAMI; Uncharacterized protein
STRINGMigut.D00401.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-155bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]