PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24949.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRF
Protein Properties Length: 454aa    MW: 49911 Da    PI: 8.3471
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24949.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-24149193145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  KZV24949.1 149 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRQRSRKPVEG 193
                 79****************************************985 PP
2QLQ47.26.7e-1786119437
         QLQ   4 TaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 T++Q+ +L +Q+l+yK+++an+PvP++Ll+++++
  KZV24949.1  86 TPSQWLELQHQALIYKHIVANVPVPSNLLVPLKR 119
                 9******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-783119IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.28684119IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.6E-1286117IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.425149193IPR014977WRC domain
PfamPF088792.6E-21150192IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MPKHGEVGLP FVAIGRSNAG RKMLSFSCSE TPCSWGMSSS GYSRKIASSI CEDEKQRITG  60
GACMYLNVCM FFCTGGPSSR LKWSVTPSQW LELQHQALIY KHIVANVPVP SNLLVPLKRS  120
PYPLGLHGSY DSTYLGLGPF HLGLSVGNDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI  180
NRGRQRSRKP VEGQTGHAVS GSTTSKLAPV TSSSSASVIS RCSSLGAVQS QFNYLQANNG  240
ISSADNFAKR SQEMQDLSLI PCINVLKFKD VASSVQEEGV PFEKTSETEF GLVTSDSLVR  300
VSLTKSSNPE SLSGFHEQEG KEQNSINDFI NVWPKDHSNR AYDSWPEKLN YDWTPFSMSI  360
PMALPDFSSS PSSPKQEKSI MSSPRLPWEH NPIQMSLGTS NLDLGEPIQK HSSWSPISWG  420
NSIGGPLGEA LTSTTRRSET LDNFSLPETF GQRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099411.11e-144growth-regulating factor 1
TrEMBLA0A2Z7AZV10.0A0A2Z7AZV1_9LAMI; Growth-regulating factor 1-like
STRINGXP_009589483.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-73growth-regulating factor 1