PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV24953.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

HSF

Protein Properties

Length: 207aa MW: 23520.6 Da PI: 9.0183

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV24953.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.8	6.6e-37	10	100	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F++k+y++++d++ ++++sw+e+g++fvv+++ efa+ +Lp+yFkh+nf+SFvRQLn+YgF+k+ +++ weF +++F++g++ell++i+ KZV24953.1 10 FITKTYSLVDDPSSNDVVSWNEDGTTFVVWKTAEFARVLLPNYFKHNNFSSFVRQLNTYGFRKIAQNK---------WEFCNDNFRRGQQELLTQIH 97 9*************************************************************9988.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k KZV24953.1 98 RRK 100 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.2E-54	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.06E-34	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.8E-38	8	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-32	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-20	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-20	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	49	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-20	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MAQRCVPSPF ITKTYSLVDD PSSNDVVSWN EDGTTFVVWK TAEFARVLLP NYFKHNNFSS 60 FVRQLNTYGF RKIAQNKWEF CNDNFRRGQQ ELLTQIHRRK IAPPQPPPGN PASPGDELGS 120 STTGSLDTQA SPRITDLSDE NEKLRKDNQA LNLELVQTKR QCNDLICFLS KNMQVDPDQI 180 NRVLSRSDSA PMPSVKCVRL FGVILKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-23	6	99	26	129	Heat shock factor protein 1
5d5v_B	9e-23	6	99	26	129	Heat shock factor protein 1
5d5v_D	9e-23	6	99	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV24953.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099137.1	1e-86	heat shock factor protein HSF24
Swissprot	P22335	2e-80	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A2Z7ATY7	1e-152	A0A2Z7ATY7_9LAMI; Heat stress transcription factor B-1-like
STRING	XP_009589845.1	2e-84	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9991	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	5e-66	heat shock factor 4

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]