PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25386.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 431aa    MW: 47201.9 Da    PI: 7.2846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25386.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-125479126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++++ C +++rtGtC yG++C+F+H+
  KZV25386.1 54 PGEPDCIYYLRTGTCGYGSNCRFNHP 79
                5789*********************8 PP
2zf-CCCH36.58e-12100124327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C ++++tG+CkyG++Ck++H++
  KZV25386.1 100 QPDCGYYLKTGWCKYGSTCKYHHPK 124
                 789********************96 PP
3zf-CCCH31.72.6e-10146169427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C +++rtG CkyG  CkF+H++
  KZV25386.1 146 KPCLYYMRTGLCKYGYACKFHHPQ 169
                 58********************97 PP
4zf-CCCH34.92.5e-11264289227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++Cr+f+ +G CkyG  Ck++H++
  KZV25386.1 264 DQPECRYFMNYGSCKYGLDCKYNHPR 289
                 689*********************96 PP
5zf-CCCH32.61.3e-10309334126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C++++ +G CkyG++C+F H+
  KZV25386.1 309 PGHPVCSYYSLYGLCKYGPTCRFDHP 334
                 57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-65380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.545381IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-105579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55982IPR000571Zinc finger, CCCH-type
SMARTSM003560.001897124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.66297125IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6102125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014142170IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4142169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-6142169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4146168IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8146169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591262290IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4262289IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9264289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6265292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4268290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6307334IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798308336IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-8310334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4313334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MPGNSRMRRH GVVSDSYNPA PDQVEADMMS RLKLENSDDN GGVGNEAGAY PARPGEPDCI  60
YYLRTGTCGY GSNCRFNHPS NEEHDYGVRN PAELPERAGQ PDCGYYLKTG WCKYGSTCKY  120
HHPKDRPVDS SAIPNMLGLP MREDAKPCLY YMRTGLCKYG YACKFHHPQP LSTANVLPVV  180
GPAVVSACGA PSVGEFPTVS LSKATYLPSP SMQLPQSYMP LFLSPSQGWS TYMGSFSPLS  240
MTTVHTTPAS NGKLSASYLP ERPDQPECRY FMNYGSCKYG LDCKYNHPRE KISQLTSSSL  300
GPLGLPLRPG HPVCSYYSLY GLCKYGPTCR FDHPLHPYPY AYGLSIPSLA APHSPSLLYQ  360
KTPQVPSSEI SPSKSSTLSD GVKKEASGSD DNWHSSSKGC EDSTDQSNSL PNSYKTPTPY  420
ELIHYDSCES G
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085489.10.0zinc finger CCCH domain-containing protein 33 isoform X2
TrEMBLA0A2Z7AVG50.0A0A2Z7AVG5_9LAMI; Zinc finger CCCH domain-containing protein 3
STRINGMigut.H01247.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.27e-89C3H family protein