PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV25770.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

WRKY

Protein Properties

Length: 714aa MW: 78978.3 Da PI: 8.7532

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV25770.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.4e-32	385	442	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kk+vers ++++ei+Y+g+H+h KZV25770.1 385 LDDGYNWRKYGQKSVKGSENPRSYYKCTHPSCPTKKQVERSL-SGQITEIVYKGSHTHA 442 59**************************************.9************7 PP
2	WRKY	105.7	2.3e-33	563	619	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++prsYY+Cts++Cpv+k+ver+++dpk v++tYeg+Hnh+ KZV25770.1 563 DGYRWRKYGQKVVKGNPNPRSYYKCTSPQCPVRKHVERASHDPKSVITTYEGRHNHD 619 9*******************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	3.8E-23	6	92	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	4.43E-22	6	95	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50102	13.976	10	89	IPR000504	RNA recognition motif domain
SMART	SM00360	8.7E-13	11	85	IPR000504	RNA recognition motif domain
CDD	cd12246	6.55E-48	11	88	No hit	No description
Pfam	PF00076	2.3E-8	12	83	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	2.2E-9	147	219	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	3.9E-7	149	219	IPR012677	Nucleotide-binding alpha-beta plait domain
CDD	cd12247	1.25E-16	155	192	No hit	No description
SMART	SM00360	4.7	158	230	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:2.20.25.80	9.5E-28	374	444	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-25	379	444	IPR003657	WRKY domain
PROSITE profile	PS50811	23.801	380	444	IPR003657	WRKY domain
SMART	SM00774	1.1E-35	385	443	IPR003657	WRKY domain
Pfam	PF03106	9.9E-25	386	441	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.3E-36	546	621	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-28	553	621	IPR003657	WRKY domain
PROSITE profile	PS50811	37.08	556	621	IPR003657	WRKY domain
SMART	SM00774	4.1E-38	561	620	IPR003657	WRKY domain
Pfam	PF03106	1.9E-25	563	619	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0000166	Molecular Function	nucleotide binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MLTSDIPPNQ TIYIRNINEK VKKEELKRSL YALFSQYGRI LDIVAMKTSK LQGQAWIVFS 60 EVAAASNALR QMHNFPFYDK PIRIQYAKTK SDCIAKAEGT YDKKKKQEER AERKRKVEEG 120 HQTANANGIR SESNGGAAAT SREGKPVTQE TATEPNHILF IQNLPYETNI MMLELLFKQY 180 PGFREVRMVE AKPGSLESTV NPGLCSVVMT SPNSFTTLLA PDHHHHPTTG TALHGEVEGR 240 KGPGVPKFKA VPPPSLPISP PSAASPFSYF GLSPAEFLDS PVLLSSSNIL PSPTTGTFPS 300 SNWKGDSNTI YQKDIKPDQK SYSDFSFQPD TVSTVFPTWE YYQEPAKQDN LPPEKNFLNS 360 EFNPNQQIDQ YNESSVCSVA ENKRLDDGYN WRKYGQKSVK GSENPRSYYK CTHPSCPTKK 420 QVERSLSGQI TEIVYKGSHT HAKPQTVRRS SATVSASSTV SASSVVIQSQ KEIREQLSDG 480 SVDIRKMDSS VATPPENSSV SVGDDEFDYR SKFGGDDFDE DGPDTKRWKC ENGSENAGGM 540 GCKTVREPRV VVQTKSDIDI LIDGYRWRKY GQKVVKGNPN PRSYYKCTSP QCPVRKHVER 600 ASHDPKSVIT TYEGRHNHDV PAPRGAGNHS LTQPVPYKPS NNAAMAGALP VRGGPVEAQA 660 FTLEMLPSPA GSFRYSGFGN TVGSGIDLSQ GNALFSRAKD EPGDYSFLDS SLYK

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MLTSDIPPNQ TIYIRNINEK VKKEELKRSL YALFSQYGRI LDIVAMKTSK LQGQAWIVFS  60
EVAAASNALR QMHNFPFYDK PIRIQYAKTK SDCIAKAEGT YDKKKKQEER AERKRKVEEG  120
HQTANANGIR SESNGGAAAT SREGKPVTQE TATEPNHILF IQNLPYETNI MMLELLFKQY  180
PGFREVRMVE AKPGSLESTV NPGLCSVVMT SPNSFTTLLA PDHHHHPTTG TALHGEVEGR  240
KGPGVPKFKA VPPPSLPISP PSAASPFSYF GLSPAEFLDS PVLLSSSNIL PSPTTGTFPS  300
SNWKGDSNTI YQKDIKPDQK SYSDFSFQPD TVSTVFPTWE YYQEPAKQDN LPPEKNFLNS  360
EFNPNQQIDQ YNESSVCSVA ENKRLDDGYN WRKYGQKSVK GSENPRSYYK CTHPSCPTKK  420
QVERSLSGQI TEIVYKGSHT HAKPQTVRRS SATVSASSTV SASSVVIQSQ KEIREQLSDG  480
SVDIRKMDSS VATPPENSSV SVGDDEFDYR SKFGGDDFDE DGPDTKRWKC ENGSENAGGM  540
GCKTVREPRV VVQTKSDIDI LIDGYRWRKY GQKVVKGNPN PRSYYKCTSP QCPVRKHVER  600
ASHDPKSVIT TYEGRHNHDV PAPRGAGNHS LTQPVPYKPS NNAAMAGALP VRGGPVEAQA  660
FTLEMLPSPA GSFRYSGFGN TVGSGIDLSQ GNALFSRAKD EPGDYSFLDS SLYK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_X	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
5o9z_1	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
5xjc_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
5yzg_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
5z56_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
5z57_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
5z58_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
6ah0_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
6ahd_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
6ff7_X	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
6icz_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
6id0_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
6id1_p	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
6qx9_2B	5e-55	5	189	2	183	U2 small nuclear ribonucleoprotein B''
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV25770.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080757.1	1e-163	probable WRKY transcription factor 25
Swissprot	Q6B6R4	1e-109	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A2Z7AXU6	0.0	A0A2Z7AXU6_9LAMI; Putative WRKY transcription factor 33
STRING	VIT_06s0004g07500.t01	1e-146	(Vitis vinifera)
STRING	GLYMA14G38010.1	1e-146	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2286	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	2e-94	WRKY DNA-binding protein 33

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]